RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 LRIT1Q9P2V4 623 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 DMTF1Q9Y222 760 aa6.86□□□□□ -1.31
NUP54-209ENST00000510569 KIAA0391O15091 583 aaKnown RBP6.85□□□□□ -1.31
NUP54-209ENST00000510569 C1QL1O75973 258 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 CACNA2D1P54289 1103 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 CREMQ03060 361 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 TARDBPQ13148 414 aaKnown RBP eCLIP6.85□□□□□ -1.31
NUP54-209ENST00000510569 NECAB2Q7Z6G3 386 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 RHOT1Q8IXI2 618 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 CBARPQ8N350 705 aaPredicted RBP6.85□□□□□ -1.31
NUP54-209ENST00000510569 TBC1D15Q8TC07 691 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 PUS7LQ9H0K6 701 aaKnown RBP6.85□□□□□ -1.31
NUP54-209ENST00000510569 MCM8Q9UJA3 840 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 TUBD1Q9UJT1 453 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 INTUQ9ULD6 942 aa6.85□□□□□ -1.31
NUP54-209ENST00000510569 A0A1W2PS29 197 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 IGLV2-14P01704 120 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 CDC42EP1Q00587 391 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 HNRNPA0Q13151 305 aaKnown RBP6.84□□□□□ -1.31
NUP54-209ENST00000510569 LRCH2Q5VUJ6 765 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 ZKSCAN2Q63HK3 967 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 EGFLAMQ63HQ2 1017 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 MIGA2Q7L4E1 593 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 CNTD1Q8N815 330 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 IFI44Q8TCB0 444 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 KIAA1586Q9HCI6 787 aa6.84□□□□□ -1.31
NUP54-209ENST00000510569 SAP30BPQ9UHR5 308 aaKnown RBP6.84□□□□□ -1.31
NUP54-209ENST00000510569 TRGV11A0A075B6L2 103 aa6.83□□□□□ -1.32
NUP54-209ENST00000510569 SGTAO43765 313 aa6.83□□□□□ -1.32
NUP54-209ENST00000510569 KIAA0895LQ68EN5 471 aa6.83□□□□□ -1.32
NUP54-209ENST00000510569 SPATA5L1Q9BVQ7 753 aa6.83□□□□□ -1.32
NUP54-209ENST00000510569 PROM1O43490 865 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 NDUFS2O75306 463 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 MATN4O95460 622 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 SRGNP10124 158 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 PPM1NQ8N819 430 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 C1orf162Q8NEQ5 155 aaPredicted RBP6.82□□□□□ -1.32
NUP54-209ENST00000510569 JADE3Q92613 823 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 TMX3Q96JJ7 454 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 TLR10Q9BXR5 811 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 TDP1Q9NUW8 608 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 SLC5A4Q9NY91 659 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 SLC17A6Q9P2U8 582 aa6.82□□□□□ -1.32
NUP54-209ENST00000510569 GRM6O15303 877 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 MTHFD1P11586 935 aaKnown RBP6.81□□□□□ -1.32
NUP54-209ENST00000510569 KCNA2P16389 499 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 C5AR1P21730 350 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 LMO1P25800 156 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 IARSP41252 1262 aaKnown RBP6.81□□□□□ -1.32
NUP54-209ENST00000510569 FOLR3P41439 243 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 SF3B3Q15393 1217 aaKnown RBP6.81□□□□□ -1.32
NUP54-209ENST00000510569 CLUL1Q15846 466 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 PABPC1LQ4VXU2 614 aaKnown RBP6.81□□□□□ -1.32
NUP54-209ENST00000510569 VWA1Q6PCB0 445 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.81□□□□□ -1.32
NUP54-209ENST00000510569 DDX42Q86XP3 938 aaKnown RBP eCLIP6.81□□□□□ -1.32
NUP54-209ENST00000510569 IL17RDQ8NFM7 739 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 HDAC10Q969S8 669 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 NEU2Q9Y3R4 380 aa6.81□□□□□ -1.32
NUP54-209ENST00000510569 PRAMEF33A0A0G2JMD5 474 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 INO80B-WBP1J3KQ70 363 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 PEX1O43933 1283 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 PRAMEF10O60809 474 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 PROP1O75360 226 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 AGFG2O95081 481 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 SLC16A1P53985 500 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 CLNKQ7Z7G1 428 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 RAB24Q969Q5 203 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 HEPHQ9BQS7 1158 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 INO80BQ9C086 356 aaPredicted RBP6.8□□□□□ -1.32
NUP54-209ENST00000510569 VSX1Q9NZR4 365 aaPredicted RBP6.8□□□□□ -1.32
NUP54-209ENST00000510569 JKAMPQ9P055 326 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 CTTNBP2NLQ9P2B4 639 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 FRMD4BQ9Y2L6 1034 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 IPPQ9Y573 584 aa6.8□□□□□ -1.32
NUP54-209ENST00000510569 SETD1BQ9UPS6 1966 aaKnown RBP6.79□□□□□ -1.32
NUP54-209ENST00000510569 RBMXL2O75526 392 aaKnown RBP6.79□□□□□ -1.32
NUP54-209ENST00000510569 SBK3P0C264 359 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 KRT85P78386 507 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 RSPH3Q86UC2 560 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 ARHGEF25Q86VW2 580 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 MRGPRX4Q96LA9 322 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 KLK15Q9H2R5 256 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 INTS13Q9NVM9 706 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 MKS1Q9NXB0 559 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.79□□□□□ -1.32
NUP54-209ENST00000510569 CDYLQ9Y232 598 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 PCDHA13Q9Y5I0 950 aa6.79□□□□□ -1.32
NUP54-209ENST00000510569 YY2O15391 372 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 MPPED1O15442 326 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 SLC43A1O75387 559 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 RAB39AQ14964 217 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 NBPF8Q3BBV2 869 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 FLYWCH1Q4VC44 716 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 UTP14CQ5TAP6 766 aaKnown RBP6.78□□□□□ -1.32
NUP54-209ENST00000510569 PGM2L1Q6PCE3 622 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 ZNF365Q70YC5 407 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 TMEM125Q96AQ2 219 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 UROC1Q96N76 676 aa6.78□□□□□ -1.32
NUP54-209ENST00000510569 KLHL32Q96NJ5 620 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms