RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PPARGC1AQ9UBK2 798 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 VTI1BQ9UEU0 232 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 DDX25Q9UHL0 483 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 HERC5Q9UII4 1024 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 ZNF221Q9UK13 617 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ADAMTS8Q9UP79 889 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PCDHGA11Q9Y5H2 935 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 MROH7-TTC4A0A0A0MT08 1334 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 MAST3O60307 1309 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TNRC6CQ9HCJ0 1690 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 BTN3A3O00478 584 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TEX28O15482 410 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ITGA10O75578 1167 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ANP32DO95626 131 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 BAG3O95817 575 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 IFNA7P01567 189 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 IL6P05231 212 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 COX4I1P13073 169 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ATP4AP20648 1035 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CA4P22748 312 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CDH6P55285 790 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ARL4CP56559 192 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ZBED6P86452 979 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TAP1Q03518 808 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RAD51Q06609 339 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 SMCO1Q147U7 214 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 QPRTQ15274 297 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 HSD17B12Q53GQ0 312 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TMEM67Q5HYA8 995 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TWF2Q6IBS0 349 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 CHADLQ6NUI6 762 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 FBXO42Q6P3S6 717 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 AAGABQ6PD74 315 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 LVRNQ6Q4G3 990 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PIK3AP1Q6ZUJ8 805 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 NET1Q7Z628 596 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 SMYD4Q8IYR2 804 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 RHPN1Q8TCX5 695 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 SEC16BQ96JE7 1060 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TSEN34Q9BSV6 310 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 OSBPL10Q9BXB5 764 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 FRMD8P1Q9BZ68 369 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 UNKQ9C0B0 810 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 DYRK4Q9NR20 520 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 TAB2Q9NYJ8 693 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PLK2Q9NYY3 685 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 COMMD9Q9P000 198 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 MYRFQ9Y2G1 1151 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TDRKHQ9Y2W6 561 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 NFE2L3Q9Y4A8 694 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ZHX2Q9Y6X8 837 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 C15orf38-AP3S2A0A0A6YYH1 394 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PIK3R2O00459 728 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TNPO2O14787 897 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 PPEF1O14829 653 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 RIMBP2O15034 1052 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NCAM2O15394 837 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PDPK1O15530 556 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PSMD3O43242 534 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SLC26A4O43511 780 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 FOXO3O43524 673 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GAS7O60861 476 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ARF4P18085 180 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 SOX5P35711 763 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MAGEA2P43356 314 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SLC34A1Q06495 639 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 COX10Q12887 443 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TAF5Q15542 800 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 BSPRYQ5W0U4 402 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ERAP2Q6P179 960 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MARK2Q7KZI7 788 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 DHX32Q7L7V1 743 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 HAUS6Q7Z4H7 955 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NOP9Q86U38 636 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 ANKRD13BQ86YJ7 626 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 P3H2Q8IVL5 708 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CCDC28AQ8IWP9 274 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PDIK1LQ8N165 341 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF398Q8TD17 642 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 APPBP2Q92624 585 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 AKAP1Q92667 903 aaKnown RBP eCLIP3.74□□□□□ -1.81
USP53-205ENST00000509769 FAM212AQ96EL1 285 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SCYL1Q96KG9 808 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GAL3ST1Q99999 423 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 XPO4Q9C0E2 1151 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 THAP9Q9H5L6 903 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 KAT14Q9H8E8 782 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GPN1Q9HCN4 374 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 TMOD3Q9NYL9 352 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 STK39Q9UEW8 545 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 AMACRQ9UHK6 382 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PLAAQ9Y263 795 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ACEP12821 1306 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 NAIPQ13075 1403 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PTPRUQ92729 1446 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ZBTB5O15062 677 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 RAD51BO15315 384 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GTPBP6O43824 516 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 PPP6R2O75170 966 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms