RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	PTPA	Q15257	358 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	CTXN3	Q4LDR2	81 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	PABPC1L	Q4VXU2	614 aa	Known RBP	11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	SEZ6	Q53EL9	994 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	TPGS2	Q68CL5	300 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	ASTL	Q6HA08	431 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	SLC8B1	Q6J4K2	584 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	USP37	Q86T82	979 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	MAP4K3	Q8IVH8	894 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	BEST2	Q8NFU1	509 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	C18orf25	Q96B23	403 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	EPSTI1	Q96J88	318 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	ZNF396	Q96N95	335 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	MYADM	Q96S97	322 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	RTP3	Q9BQQ7	232 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	LRRC27	Q9C0I9	530 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	WNT16	Q9UBV4	365 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	FBXO2	Q9UK22	296 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	CDH7	Q9ULB5	785 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	KCNH3	Q9ULD8	1083 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	MAFF	Q9ULX9	164 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	ANK1	P16157	1881 aa		11.33	□□□□□ -0.6
NR1I3-222	ENST00000506018	TTC26	A0AVF1	554 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	STK25	O00506	426 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	ADAM12	O43184	909 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	N4BP1	O75113	896 aa	Known RBP	11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	PDGFB	P01127	241 aa	Predicted RBP	11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	SRF	P11831	508 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	CPB1	P15086	417 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	ATF2	P15336	505 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	LRPAP1	P30533	357 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	STAT6	P42226	847 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	VCP	P55072	806 aa	Known RBP	11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	ROR1	Q01973	937 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	YWHAH	Q04917	246 aa	Predicted RBP	11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	STK38	Q15208	465 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	SPECC1	Q5M775	1068 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	ADAL	Q6DHV7	355 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	IQCE	Q6IPM2	695 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	CD300LG	Q6UXG3	332 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	DSTYK	Q6XUX3	929 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	DYM	Q7RTS9	669 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	SLC44A3	Q8N4M1	653 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	FLCN	Q8NFG4	579 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	FEZF2	Q8TBJ5	459 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	DDX12P	Q92771	950 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	SMOC2	Q9H3U7	446 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	ST6GALNAC4	Q9H4F1	302 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	MRPL44	Q9H9J2	332 aa	Known RBP	11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	CYP4F11	Q9HBI6	524 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	CHMP5	Q9NZZ3	219 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	TUBGCP4	Q9UGJ1	667 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018	PIEZO1	Q92508	2521 aa		11.32	□□□□□ -0.6
NR1I3-222	ENST00000506018		A0A0B4J269	797 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	LACTBL1	A8MY62	500 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	ZNF197	O14709	1029 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	ABLIM3	O94929	683 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	CFH	P08603	1231 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	PTPN2	P17706	415 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	NMT1	P30419	496 aa	Known RBP	11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	TNFSF9	P41273	254 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	POU5F1	Q01860	360 aa	Known RBP	11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	PDAP1	Q13442	181 aa	Known RBP	11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	ALCAM	Q13740	583 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	SLC39A14	Q15043	492 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	IER5L	Q5T953	404 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	STXBP4	Q6ZWJ1	553 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	ALYREF	Q86V81	257 aa	Known RBP	11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	SIX5	Q8N196	739 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	PRSS33	Q8NF86	280 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	ASB7	Q9H672	318 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	FBXL5	Q9UKA1	691 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	MTMR6	Q9Y217	621 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	DERA	Q9Y315	318 aa		11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	MRPS23	Q9Y3D9	190 aa	Known RBP	11.31	□□□□□ -0.6
NR1I3-222	ENST00000506018	WDR27	A2RRH5	827 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	ANHX	E9PGG2	379 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	ODC1	P11926	461 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	IDE	P14735	1019 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	MRE11	P49959	708 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	SPAG1	Q07617	926 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	PLD1	Q13393	1074 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	HTR4	Q13639	388 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	MRPL58	Q14197	206 aa	Known RBP	11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	TMEM132D	Q14C87	1099 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	ENOX2	Q16206	610 aa	Known RBP	11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	FAM173B	Q6P4H8	233 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	RSPO2	Q6UXX9	243 aa	Predicted RBP	11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	ZNF720	Q7Z2F6	126 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	SFR1	Q86XK3	245 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	NT5DC4	Q86YG4	428 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	TCEAL8	Q8IYN2	117 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	SYCP3	Q8IZU3	236 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	LRRC15	Q8TF66	581 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	RSAD2	Q8WXG1	361 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	POMGNT1	Q8WZA1	660 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	ATOH1	Q92858	354 aa	Predicted RBP	11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	FGF13	Q92913	245 aa		11.3	□□□□□ -0.6
NR1I3-222	ENST00000506018	SHD	Q96IW2	340 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms