RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 LACTBL1A8MY62 500 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 PTGESO14684 152 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 MEFVO15553 781 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 IL18RAPO95256 599 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 FGFR1OPO95684 399 aaKnown RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 THP07101 528 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 ADRB2P07550 413 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 EPB41P11171 864 aaKnown RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 KCNE1P15382 129 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 ERCC5P28715 1186 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 PSMC2P35998 433 aaKnown RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 CASP4P49662 377 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 AFF1P51825 1210 aaKnown RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 SPAG1Q07617 926 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 DLX2Q07687 328 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 GRIK3Q13003 919 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 XKR4Q5GH76 650 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 CT47A1Q5JQC4 288 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 SPOUT1Q5T280 376 aaKnown RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 FOXR2Q6PJQ5 311 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 ALKAL1Q6UXT8 129 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 C11orf57Q6ZUT1 292 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 CD302Q8IX05 232 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 FIBCD1Q8N539 461 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 CSGALNACT2Q8N6G5 542 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 GSTCDQ8NEC7 633 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 SP7Q8TDD2 431 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 EEF2KMTQ96G04 330 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 RIPOR3Q96MK2 946 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 GZF1Q9H116 711 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 DNAJC25Q9H1X3 360 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 CXCL16Q9H2A7 254 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 ASB7Q9H672 318 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 CNTN3Q9P232 1028 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 CD207Q9UJ71 328 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 MRPL42Q9Y6G3 142 aaKnown RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 SMIM28A0A1B0GU29 152 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 MAPK13O15264 365 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 XPOTO43592 962 aaKnown RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 ZC3H11AO75152 810 aaKnown RBP eCLIP10.86□□□□□ -0.672e-6■■■■□ 20.6
NUP54-203ENST00000504173 AKAP3O75969 853 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 CYP24A1Q07973 514 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 TMEM132DQ14C87 1099 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 SURF1Q15526 300 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 CLUL1Q15846 466 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 TPD52L1Q16890 204 aaPredicted RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 ANO6Q4KMQ2 910 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 EPC2Q52LR7 807 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 JADE1Q6IE81 842 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 LRRC55Q6ZSA7 311 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 ZC3H3Q8IXZ2 948 aaKnown RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 FAM186BQ8IYM0 893 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 CCDC127Q96BQ5 260 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 KIF12Q96FN5 646 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 CEP63Q96MT8 703 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 ZMAT2Q96NC0 199 aaKnown RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 FNBP1Q96RU3 617 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 DUSP9Q99956 384 aaKnown RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 MKNK1Q9BUB5 465 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 NAT10Q9H0A0 1025 aaKnown RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 PDE11AQ9HCR9 933 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 SLC38A7Q9NVC3 462 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 HCSTQ9UBK5 93 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 PLAGL2Q9UPG8 496 aa10.86□□□□□ -0.67
NUP54-203ENST00000504173 TDRD15B5MCY1 1934 aaKnown RBP10.86□□□□□ -0.67
NUP54-203ENST00000504173 TRIP11Q15643 1979 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 SLC16A3O15427 465 aaKnown RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 TBX10O75333 385 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 DDHD2O94830 711 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 PDGFBP01127 241 aaPredicted RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 NFICP08651 508 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 DLATP10515 647 aaKnown RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 KRT13P13646 458 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 LAG3P18627 525 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 WNT7BP56706 349 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 PSMD6Q15008 389 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 CCDC40Q4G0X9 1142 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 INTS8Q75QN2 995 aaKnown RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 FILIP1Q7Z7B0 1213 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 USP37Q86T82 979 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 ZNF280BQ86YH2 543 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 EFCAB13Q8IY85 973 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 TMEM105Q8N8V8 129 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 BEST2Q8NFU1 509 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 C18orf25Q96B23 403 aaPredicted RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 MSLNLQ96KJ4 702 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 PPP1R10Q96QC0 940 aaKnown RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 MED15Q96RN5 788 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 TSPAN18Q96SJ8 248 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 CGRRF1Q99675 332 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 FUCA2Q9BTY2 467 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 SRRTQ9BXP5 876 aaKnown RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 SEMA4AQ9H3S1 761 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 CWH43Q9H720 699 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 NRDE2Q9H7Z3 1164 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 AAASQ9NRG9 546 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 TUBGCP4Q9UGJ1 667 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 UBQLN1Q9UMX0 589 aaKnown RBP10.85□□□□□ -0.67
NUP54-203ENST00000504173 DERAQ9Y315 318 aa10.85□□□□□ -0.67
NUP54-203ENST00000504173 C2CD2Q9Y426 696 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms