RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 HABP4Q5JVS0 413 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 CDKAL1Q5VV42 579 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 TDRD10Q5VZ19 366 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 DCLRE1AQ6PJP8 1040 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 SV2AQ7L0J3 742 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 RNF214Q8ND24 703 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 FAM200AQ8TCP9 573 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 SLC35C1Q96A29 364 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 TMEM169Q96HH4 297 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 IGSF21Q96ID5 467 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 SAMD11Q96NU1 681 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 ZNF576Q9H609 170 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 ALG13Q9NP73 1137 aaKnown RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.84□□□□□ -0.358e-7■■■■■ 166.8
CUX1-210ENST00000497815 SIX4Q9UIU6 781 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 NUB1Q9Y5A7 615 aa12.84□□□□□ -0.35
CUX1-210ENST00000497815 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.84□□□□□ -0.35
CUX1-210ENST00000497815 KIAA1671Q9BY89 1806 aa12.83□□□□□ -0.35
CUX1-210ENST00000497815 ANO9A1A5B4 782 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 GOLGA6L19H0YKK7 550 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 RFXAPO00287 272 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 PES1O00541 588 aaKnown RBP12.83□□□□□ -0.36
CUX1-210ENST00000497815 PIRO00625 290 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 CST3P01034 146 aaPredicted RBP12.83□□□□□ -0.36
CUX1-210ENST00000497815 C4BPAP04003 597 aaKnown RBP12.83□□□□□ -0.36
CUX1-210ENST00000497815 PRKCSHP14314 528 aaPredicted RBP12.83□□□□□ -0.36
CUX1-210ENST00000497815 EEF1GP26641 437 aaKnown RBP12.83□□□□□ -0.36
CUX1-210ENST00000497815 PPM1AP35813 382 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 PIK3CAP42336 1068 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 BRCC3P46736 316 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 MXI1P50539 228 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 AP3M2P53677 418 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 ENPEPQ07075 957 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 GPM6BQ13491 265 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 TRPC3Q13507 836 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 CBWD6Q4V339 395 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 CBWD3Q5JTY5 395 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 CBWD5Q5RIA9 395 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 KRT39Q6A163 491 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 TAS1R2Q8TE23 839 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 GDPD5Q8WTR4 605 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 ELMO3Q96BJ8 720 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 TUBGCP2Q9BSJ2 902 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 C11orf84Q9BUA3 381 aaPredicted RBP12.83□□□□□ -0.36
CUX1-210ENST00000497815 PLVAPQ9BX97 442 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 HSD3B7Q9H2F3 369 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 TMEM8AQ9HCN3 771 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 TAB2Q9NYJ8 693 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 ADAM28Q9UKQ2 775 aa12.83□□□□□ -0.36
CUX1-210ENST00000497815 PDCD11Q14690 1871 aaKnown RBP12.82□□□□□ -0.36
CUX1-210ENST00000497815 EPOPA6NHQ4 379 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 SPTLC1O15269 473 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 GRM6O15303 877 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 VNN1O95497 513 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 HLA-DRAP01903 254 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 AFPP02771 609 aaKnown RBP12.82□□□□□ -0.36
CUX1-210ENST00000497815 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 ATP1A3P13637 1013 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 GTF2H1P32780 548 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 FMO5P49326 533 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 TAF6P49848 677 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 MYL6P60660 151 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 TPM4P67936 248 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 MYL7Q01449 175 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 KRT17Q04695 432 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 KCNH2Q12809 1159 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 NCOA4Q13772 614 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 MAN2A1Q16706 1144 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 ZACNQ401N2 412 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 FUT10Q6P4F1 479 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 CD300LGQ6UXG3 332 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 DSTYKQ6XUX3 929 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 CXorf38Q8TB03 319 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 HPDLQ96IR7 371 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 B3GALT6Q96L58 329 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 ZNF560Q96MR9 790 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 FAM161BQ96MY7 647 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 VPS16Q9H269 839 aa12.82□□□□□ -0.36
CUX1-210ENST00000497815 TTYH1Q9H313 450 aaPredicted RBP12.82□□□□□ -0.36
CUX1-210ENST00000497815 TRIP11Q15643 1979 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 CARNS1A5YM72 827 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 C5orf67F2Z3F1 127 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 H3BNC9 293 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 TMEM189-UBE2V1I3L0A0 370 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 RB1P06400 928 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 ZNF18P17022 549 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 CA8P35219 290 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 LILRA4P59901 499 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 MCCD1P59942 119 aaPredicted RBP12.81□□□□□ -0.36
CUX1-210ENST00000497815 PLCB3Q01970 1234 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 MYO1EQ12965 1108 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 KRT31Q15323 416 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 SV2CQ496J9 727 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 VWA3BQ502W6 1294 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 TIGD5Q53EQ6 642 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 ZNF697Q5TEC3 545 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 FAM171A1Q5VUB5 890 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 C15orf39Q6ZRI6 1047 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 TAS1R1Q7RTX1 841 aa12.81□□□□□ -0.36
CUX1-210ENST00000497815 CEP57Q86XR8 500 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms