RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 BRSK2Q8IWQ3 736 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 SLC22A17Q8WUG5 538 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 HDAC7Q8WUI4 952 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 NECTIN4Q96NY8 510 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 CBWD1Q9BRT8 395 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 IKZF4Q9H2S9 585 aa17.74■□□□□ 0.43
SF3A1-209ENST00000496189 USP15Q9Y4E8 981 aaPredicted RBP17.74■□□□□ 0.43
SF3A1-209ENST00000496189 XIRP2A4UGR9 3374 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 GOLGA8IPA6NC78 632 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 GOLGA8JA6NMD2 632 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 NFICP08651 508 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 FGFR3P22607 806 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 MTHFRP42898 656 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 KNOP1Q1ED39 458 aaKnown RBP17.73■□□□□ 0.43
SF3A1-209ENST00000496189 RARS2Q5T160 578 aaKnown RBP17.73■□□□□ 0.43
SF3A1-209ENST00000496189 LIN9Q5TKA1 542 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 USP37Q86T82 979 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 PALB2Q86YC2 1186 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 C3orf58Q8NDZ4 430 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 GLIS3Q8NEA6 775 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 SCFD1Q8WVM8 642 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 SUSD3Q96L08 255 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 APOL5Q9BWW9 433 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 GTPBP4Q9BZE4 634 aaKnown RBP17.73■□□□□ 0.43
SF3A1-209ENST00000496189 ADAM7Q9H2U9 754 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 PLEKHA4Q9H4M7 779 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 MAN1C1Q9NR34 630 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 AGPAT3Q9NRZ7 376 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 HSPBP1Q9NZL4 362 aa17.73■□□□□ 0.43
SF3A1-209ENST00000496189 SPTBN5Q9NRC6 3674 aaKnown RBP17.73■□□□□ 0.43
SF3A1-209ENST00000496189 PDCD11Q14690 1871 aaKnown RBP17.73■□□□□ 0.43
SF3A1-209ENST00000496189 TNFRSF10AO00220 468 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 MEFVO15553 781 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-209ENST00000496189 KLRC4O43908 158 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 TMEM191BP0C7N4 346 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 PRR29P0C7W0 189 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 TKTP29401 623 aaKnown RBP17.72■□□□□ 0.43
SF3A1-209ENST00000496189 TFAMQ00059 246 aaKnown RBP17.72■□□□□ 0.43
SF3A1-209ENST00000496189 KCNB1Q14721 858 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 CBX2Q14781 532 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-209ENST00000496189 ZBTB6Q15916 424 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 BMT2Q1RMZ1 405 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 ATAT1Q5SQI0 421 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 CRELD2Q6UXH1 353 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-209ENST00000496189 ADHFE1Q8IWW8 467 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 LNX1Q8TBB1 728 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-209ENST00000496189 SMARCE1Q969G3 411 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 ANKRD36BP1Q96IX9 119 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 ZNF560Q96MR9 790 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 FNBP1Q96RU3 617 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 DPP3Q9NY33 737 aa17.72■□□□□ 0.43
SF3A1-209ENST00000496189 I3L4J1 428 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 RHOBTB3O94955 611 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 TNNC2P02585 160 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 ODC1P11926 461 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 RPL17P18621 184 aaKnown RBP17.71■□□□□ 0.43
SF3A1-209ENST00000496189 PNPLA4P41247 253 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 CYP2J2P51589 502 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 PNOCQ13519 176 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 ZNF280DQ6N043 979 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 SYCE2Q6PIF2 218 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 XXYLT1Q8NBI6 393 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 GSDMAQ96QA5 445 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 OXCT2Q9BYC2 517 aaPredicted RBP17.71■□□□□ 0.43
SF3A1-209ENST00000496189 MTRRQ9UBK8 725 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 PCDHB8Q9UN66 801 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 BACE2Q9Y5Z0 518 aa17.71■□□□□ 0.43
SF3A1-209ENST00000496189 TCF20Q9UGU0 1960 aaKnown RBP17.71■□□□□ 0.43
SF3A1-209ENST00000496189 CLIC2O15247 247 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 TGM5O43548 720 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 CALUO43852 315 aaPredicted RBP17.7■□□□□ 0.42
SF3A1-209ENST00000496189 EXOC3O60645 756 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 OR1D2P34982 312 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 TAF6P49848 677 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 YWHAHQ04917 246 aaPredicted RBP17.7■□□□□ 0.42
SF3A1-209ENST00000496189 STK4Q13043 487 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 SNRNP35Q16560 246 aaKnown RBP17.7■□□□□ 0.42
SF3A1-209ENST00000496189 SV2CQ496J9 727 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 VARS2Q5ST30 1063 aaKnown RBP17.7■□□□□ 0.42
SF3A1-209ENST00000496189 C9orf57Q5W0N0 161 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 CYP26C1Q6V0L0 522 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 METTL23Q86XA0 190 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 GJD3Q8N144 294 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 KREMEN2Q8NCW0 462 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 CLSTN3Q9BQT9 956 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 PHF7Q9BWX1 381 aaPredicted RBP17.7■□□□□ 0.42
SF3A1-209ENST00000496189 S1PR5Q9H228 398 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 PIDD1Q9HB75 910 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 LMBRD1Q9NUN5 540 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 NR2E1Q9Y466 385 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 CDY1Q9Y6F8 540 aa17.7■□□□□ 0.42
SF3A1-209ENST00000496189 M0QZQ0 153 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 PDXKO00764 312 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 TGFB1I1O43294 461 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 ELF1P32519 619 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 HOXD13P35453 343 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 GUCY2FP51841 1108 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 CTXN3Q4LDR2 81 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 CD300LGQ6UXG3 332 aa17.69■□□□□ 0.42
SF3A1-209ENST00000496189 TMC5Q6UXY8 1006 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms