RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 FBXL18Q96ME1 805 aa17.27■□□□□ 0.36
LIME1-209ENST00000494776 KIAA1586Q9HCI6 787 aa17.27■□□□□ 0.36
LIME1-209ENST00000494776 AGPAT3Q9NRZ7 376 aa17.27■□□□□ 0.36
LIME1-209ENST00000494776 CGNQ9P2M7 1197 aaKnown RBP17.27■□□□□ 0.36
LIME1-209ENST00000494776 DPP7Q9UHL4 492 aa17.27■□□□□ 0.36
LIME1-209ENST00000494776 RHOBTB3O94955 611 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 TFAMQ00059 246 aaKnown RBP17.26■□□□□ 0.35
LIME1-209ENST00000494776 SNW1Q13573 536 aaKnown RBP17.26■□□□□ 0.35
LIME1-209ENST00000494776 CES5AQ6NT32 575 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 DSTYKQ6XUX3 929 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 ANKS3Q6ZW76 656 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 NT5DC4Q86YG4 428 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 TMEM130Q8N3G9 435 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 RDH13Q8NBN7 331 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 GOLGA5Q8TBA6 731 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 LNX1Q8TBB1 728 aaPredicted RBP17.26■□□□□ 0.35
LIME1-209ENST00000494776 DPP3Q9NY33 737 aa17.26■□□□□ 0.35
LIME1-209ENST00000494776 SYN3O14994 580 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 KINO60870 393 aaKnown RBP17.25■□□□□ 0.35
LIME1-209ENST00000494776 PNOCQ13519 176 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 KCNB1Q14721 858 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 SURF1Q15526 300 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 SMAD2Q15796 467 aaKnown RBP17.25■□□□□ 0.35
LIME1-209ENST00000494776 RARS2Q5T160 578 aaKnown RBP17.25■□□□□ 0.35
LIME1-209ENST00000494776 C9orf57Q5W0N0 161 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 SYCE2Q6PIF2 218 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 C12orf76Q8N812 135 aaPredicted RBP17.25■□□□□ 0.35
LIME1-209ENST00000494776 XXYLT1Q8NBI6 393 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 APPL2Q8NEU8 664 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 ENGASEQ8NFI3 743 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 SUSD3Q96L08 255 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 TIGD1Q96MW7 591 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 NECAB3Q96P71 396 aaPredicted RBP17.25■□□□□ 0.35
LIME1-209ENST00000494776 MAN1C1Q9NR34 630 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 RMND1Q9NWS8 449 aa17.25■□□□□ 0.35
LIME1-209ENST00000494776 USP15Q9Y4E8 981 aaPredicted RBP17.25■□□□□ 0.35
LIME1-209ENST00000494776 NCOR1O75376 2440 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 H7C4K7 107 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 EXOC3O60645 756 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 GADD45BO75293 160 aaPredicted RBP17.24■□□□□ 0.35
LIME1-209ENST00000494776 SMC2O95347 1197 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 TMEM191BP0C7N4 346 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 SPATA31D3P0C874 917 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 ITIH3Q06033 890 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 SNRNP35Q16560 246 aaKnown RBP17.24■□□□□ 0.35
LIME1-209ENST00000494776 VARS2Q5ST30 1063 aaKnown RBP17.24■□□□□ 0.35
LIME1-209ENST00000494776 SPATA31D4Q6ZUB0 917 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 CBWD2Q8IUF1 395 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 EFCAB13Q8IY85 973 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 CLSTN3Q9BQT9 956 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 S1PR5Q9H228 398 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 SFXN1Q9H9B4 322 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 PDE11AQ9HCR9 933 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 PCDHB8Q9UN66 801 aa17.24■□□□□ 0.35
LIME1-209ENST00000494776 R3HCC1Q9Y3T6 440 aaKnown RBP17.24■□□□□ 0.35
LIME1-209ENST00000494776 PDCD11Q14690 1871 aaKnown RBP17.24■□□□□ 0.35
LIME1-209ENST00000494776 TCF20Q9UGU0 1960 aaKnown RBP17.24■□□□□ 0.35
LIME1-209ENST00000494776 PPEF2O14830 753 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 TGM5O43548 720 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 PAX3P23760 479 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 SSTR3P32745 418 aaPredicted RBP17.23■□□□□ 0.35
LIME1-209ENST00000494776 OR1D2P34982 312 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 WNT7BP56706 349 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 CTXN3Q4LDR2 81 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 TMC5Q6UXY8 1006 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 USP37Q86T82 979 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 SMARCE1Q969G3 411 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 ANKRD36BP1Q96IX9 119 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 RIPOR3Q96MK2 946 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 FNBP1Q96RU3 617 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 ADAM7Q9H2U9 754 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 PLEKHA4Q9H4M7 779 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 MTRRQ9UBK8 725 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 PRKAG3Q9UGI9 489 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 MAPK8IP1Q9UQF2 711 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 BACE2Q9Y5Z0 518 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 CDY1Q9Y6F8 540 aa17.23■□□□□ 0.35
LIME1-209ENST00000494776 BRWD1Q9NSI6 2320 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 ANO9A1A5B4 782 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 ARHGEF37A1IGU5 675 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 PIRO00625 290 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 PDXKO00764 312 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 CALUO43852 315 aaPredicted RBP17.22■□□□□ 0.35
LIME1-209ENST00000494776 C1RP00736 705 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 KRT19P08727 400 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 DLATP10515 647 aaKnown RBP17.22■□□□□ 0.35
LIME1-209ENST00000494776 TAF6P49848 677 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 ARPP19P56211 112 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 LILRA4P59901 499 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 ATAT1Q5SQI0 421 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 ZNF280DQ6N043 979 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 C12orf56Q8IXR9 622 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 CSGALNACT2Q8N6G5 542 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 KREMEN2Q8NCW0 462 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 HDAC7Q8WUI4 952 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 ZNF560Q96MR9 790 aa17.22■□□□□ 0.35
LIME1-209ENST00000494776 POP1Q99575 1024 aaKnown RBP17.22■□□□□ 0.35
LIME1-209ENST00000494776 TIMM13Q9Y5L4 95 aaPredicted RBP17.22■□□□□ 0.35
LIME1-209ENST00000494776 M0QZQ0 153 aa17.21■□□□□ 0.35
LIME1-209ENST00000494776 ADAM12O43184 909 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms