RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 KIF2CQ99661 725 aa13.82□□□□□ -0.2
SKA1-205ENST00000494518 SH2B1Q9NRF2 756 aaPredicted RBP13.82□□□□□ -0.2
SKA1-205ENST00000494518 CNTN3Q9P232 1028 aa13.82□□□□□ -0.2
SKA1-205ENST00000494518 INSL5Q9Y5Q6 135 aa13.82□□□□□ -0.2
SKA1-205ENST00000494518 KIF26AQ9ULI4 1882 aaPredicted RBP13.82□□□□□ -0.2
SKA1-205ENST00000494518 ARHGEF37A1IGU5 675 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 SYN3O14994 580 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 TBC1D4O60343 1298 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 EIF5BO60841 1220 aaKnown RBP13.81□□□□□ -0.2
SKA1-205ENST00000494518 ABLIM3O94929 683 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 CXCL8P10145 99 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 KCNE1P15382 129 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 GJA1P17302 382 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 FCARP24071 287 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 VASPP50552 380 aaPredicted RBP13.81□□□□□ -0.2
SKA1-205ENST00000494518 ADCY1Q08828 1119 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 STRN3Q13033 797 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 NOLC1Q14978 699 aaKnown RBP eCLIP13.81□□□□□ -0.2
SKA1-205ENST00000494518 FAM78AQ5JUQ0 283 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 PRSS36Q5K4E3 855 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 TBC1D32Q96NH3 1257 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 HAPLN2Q9GZV7 340 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 SEMA4AQ9H3S1 761 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.81□□□□□ -0.2
SKA1-205ENST00000494518 NDRG2Q9UN36 371 aaKnown RBP13.81□□□□□ -0.2
SKA1-205ENST00000494518 TIMM13Q9Y5L4 95 aaPredicted RBP13.81□□□□□ -0.2
SKA1-205ENST00000494518 STK24Q9Y6E0 443 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 SCN1AP35498 2009 aa13.81□□□□□ -0.2
SKA1-205ENST00000494518 TSC2P49815 1807 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 VWA3AA6NCI4 1184 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 H7C4K7 107 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 KINO60870 393 aaKnown RBP13.8□□□□□ -0.2
SKA1-205ENST00000494518 ECI2O75521 394 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 OR4Q2P0C623 313 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 MYL4P12829 197 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 CPB1P15086 417 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 ATF2P15336 505 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 CLCN6P51797 869 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 GUCY2FP51841 1108 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 TWF1Q12792 350 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 SLC10A6Q3KNW5 377 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 ZNF280DQ6N043 979 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 PDZD4Q76G19 769 aaPredicted RBP13.8□□□□□ -0.2
SKA1-205ENST00000494518 RTL10Q7L3V2 364 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 TCEAL8Q8IYN2 117 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 TMEM161BQ8NDZ6 487 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 DDX12PQ92771 950 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 BICD1Q96G01 975 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 SUSD3Q96L08 255 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 ZSWIM3Q96MP5 696 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 PGLYRP2Q96PD5 576 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 BRD9Q9H8M2 597 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 GDE1Q9NZC3 331 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 RBM19Q9Y4C8 960 aaKnown RBP13.8□□□□□ -0.2
SKA1-205ENST00000494518 ZNF638Q14966 1978 aaKnown RBP13.8□□□□□ -0.2
SKA1-205ENST00000494518 RALGAPA1Q6GYQ0 2036 aa13.8□□□□□ -0.2
SKA1-205ENST00000494518 ATG2BQ96BY7 2078 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 SDK1Q7Z5N4 2213 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 TOM1L1O75674 476 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 PLA2G4BP0C869 781 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 MAPTP10636 758 aaKnown RBP13.79□□□□□ -0.2
SKA1-205ENST00000494518 PLS3P13797 630 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 GUCY2CP25092 1073 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 RPL9P32969 192 aaKnown RBP13.79□□□□□ -0.2
SKA1-205ENST00000494518 PRPHP41219 470 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 TNFSF9P41273 254 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 VIPR2P41587 438 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 CDR1P51861 262 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 FOXK2Q01167 660 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 MRPL58Q14197 206 aaKnown RBP13.79□□□□□ -0.2
SKA1-205ENST00000494518 DHX8Q14562 1220 aaKnown RBP13.79□□□□□ -0.2
SKA1-205ENST00000494518 ZBTB41Q5SVQ8 909 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 RNF19BQ6ZMZ0 732 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 GPIHBP1Q8IV16 184 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 ELMOD1Q8N336 334 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 ELSPBP1Q96BH3 223 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 CDK5RAP3Q96JB5 506 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 AVENQ9NQS1 362 aaPredicted RBP13.79□□□□□ -0.2
SKA1-205ENST00000494518 CEP72Q9P209 647 aa13.79□□□□□ -0.2
SKA1-205ENST00000494518 TPRP12270 2363 aaKnown RBP13.79□□□□□ -0.2
SKA1-205ENST00000494518 SHISA7A6NL88 538 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 LAD1O00515 517 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 MOSPD3O75425 235 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 MARCKSP29966 332 aaPredicted RBP13.78□□□□□ -0.2
SKA1-205ENST00000494518 GDI1P31150 447 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 SMTNP53814 917 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 SLC12A3P55017 1021 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 TEAD2Q15562 447 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 CYP4A22Q5TCH4 519 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 TPGS2Q68CL5 300 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 IQCEQ6IPM2 695 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 ZNF852Q6ZMS4 543 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 ERMP1Q7Z2K6 904 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 SYT2Q8N9I0 419 aaPredicted RBP13.78□□□□□ -0.2
SKA1-205ENST00000494518 SUMF1Q8NBK3 374 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 APPL2Q8NEU8 664 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 SPIRE2Q8WWL2 714 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 RUBCNQ92622 972 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 KIF12Q96FN5 646 aa13.78□□□□□ -0.2
SKA1-205ENST00000494518 ZNF512Q96ME7 567 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms