RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 LIG4P49917 911 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 ZNF131P52739 623 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 MCL1Q07820 350 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 STK38Q15208 465 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 PSMD5Q16401 504 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 UPP1Q16831 310 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 ZBTB41Q5SVQ8 909 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 LILRA6Q6PI73 481 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 HFE2Q6ZVN8 426 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 PDILTQ8N807 584 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 KREMEN2Q8NCW0 462 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 IKZF4Q9H2S9 585 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL6A3-214ENST00000493608 FNIP2Q9P278 1114 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 LIMD1Q9UGP4 676 aa11.64□□□□□ -0.55
COL6A3-214ENST00000493608 A0A087X0B3 334 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 ANKRD63C9JTQ0 380 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 H0YCG3 227 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 PODXLO00592 558 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 HNRNPDLO14979 420 aaKnown RBP11.63□□□□□ -0.55
COL6A3-214ENST00000493608 BRD1O95696 1058 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 ASGR2P07307 311 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 CXCL8P10145 99 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 TKTP29401 623 aaKnown RBP11.63□□□□□ -0.55
COL6A3-214ENST00000493608 OR1D2P34982 312 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 TXLNAP40222 546 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 ZPBP2Q6X784 338 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 SV2BQ7L1I2 683 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 FAM160A2Q8N612 972 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-214ENST00000493608 KRI1Q8N9T8 703 aaKnown RBP11.63□□□□□ -0.55
COL6A3-214ENST00000493608 PIK3R5Q8WYR1 880 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 SMG7Q92540 1137 aaKnown RBP11.63□□□□□ -0.55
COL6A3-214ENST00000493608 STAMQ92783 540 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 FIZ1Q96SL8 496 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 SMOC2Q9H3U7 446 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 TBC1D7Q9P0N9 293 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 CNTN3Q9P232 1028 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 DENND4AQ7Z401 1863 aa11.63□□□□□ -0.55
COL6A3-214ENST00000493608 ANK1P16157 1881 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 TMEM221A6NGB7 291 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 LACTBL1A8MY62 500 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 TISP43B9A030 160 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 TMEM189-UBE2V1I3L0A0 370 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 M0R296 226 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 SPTLC2O15270 562 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 KCNE1P15382 129 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 FGFR3P22607 806 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 NASPP49321 788 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-214ENST00000493608 GUCY2FP51841 1108 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 GTF2BQ00403 316 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 ELAVL2Q12926 359 aaKnown RBP11.62□□□□□ -0.55
COL6A3-214ENST00000493608 PTPN21Q16825 1174 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 SLC39A4Q6P5W5 647 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 RSPO2Q6UXX9 243 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-214ENST00000493608 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-214ENST00000493608 SFR1Q86XK3 245 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 TDRD5Q8NAT2 981 aaKnown RBP11.62□□□□□ -0.55
COL6A3-214ENST00000493608 LINC00301Q8NCQ3 95 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 PBXIP1Q96AQ6 731 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 ZNF707Q96C28 371 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-214ENST00000493608 UROC1Q96N76 676 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 PLEKHA4Q9H4M7 779 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 PIDD1Q9HB75 910 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 SLC38A7Q9NVC3 462 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 STK17AQ9UEE5 414 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 TUBGCP4Q9UGJ1 667 aa11.62□□□□□ -0.55
COL6A3-214ENST00000493608 DOCK8Q8NF50 2099 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 TTC26A0AVF1 554 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 TRAPPC3O43617 180 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 N4BP1O75113 896 aaKnown RBP11.61□□□□□ -0.55
COL6A3-214ENST00000493608 CLTAP09496 248 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 IDEP14735 1019 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 STAT6P42226 847 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 ARPP19P56211 112 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 CREMQ03060 361 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 PKP1Q13835 747 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 ELMSAN1Q6PJG2 1045 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 BRICD5Q6PL45 260 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 C15orf39Q6ZRI6 1047 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 CCDC73Q6ZRK6 1079 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 CCDC149Q6ZUS6 474 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 ZNF720Q7Z2F6 126 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 GPR65Q8IYL9 337 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 ST13P5Q8NFI4 369 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-214ENST00000493608 CMASQ8NFW8 434 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-214ENST00000493608 ACSF2Q96CM8 615 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-214ENST00000493608 DNAJC19Q96DA6 116 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 ZNF396Q96N95 335 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-214ENST00000493608 MSTO1Q9BUK6 570 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 RPF1Q9H9Y2 349 aaKnown RBP11.61□□□□□ -0.55
COL6A3-214ENST00000493608 DPP7Q9UHL4 492 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 HCN4Q9Y3Q4 1203 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 NUB1Q9Y5A7 615 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 CDY1Q9Y6F8 540 aa11.61□□□□□ -0.55
COL6A3-214ENST00000493608 A0A0B4J269 797 aa11.6□□□□□ -0.55
COL6A3-214ENST00000493608 OGTO15294 1046 aa11.6□□□□□ -0.55
COL6A3-214ENST00000493608 CCL16O15467 120 aa11.6□□□□□ -0.55
COL6A3-214ENST00000493608 FAM189A1O60320 539 aa11.6□□□□□ -0.55
COL6A3-214ENST00000493608 ZMYND10O75800 440 aa11.6□□□□□ -0.55
COL6A3-214ENST00000493608 PIGRP01833 764 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms