RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 URODP06132 367 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ALOX15P16050 662 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 KRT4P19013 534 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 TRPC1P48995 793 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 NOTUMQ6P988 496 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 FKBP9P1Q75LS8 142 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 KRT78Q8N1N4 520 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 IPMKQ8NFU5 416 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 CPA5Q8WXQ8 436 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 MRPS31Q92665 395 aaKnown RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 TSPAN17Q96FV3 270 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 SNF8Q96H20 258 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 OSBPL5Q9H0X9 879 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 PNMA8BQ9ULN7 279 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 SPACA6W5XKT8 324 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ORC4O43929 436 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 NUMBP49757 651 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 PMS2P54278 862 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 IZUMO3Q5VZ72 239 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 C16orf87Q6PH81 154 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 CARNMT1Q8N4J0 409 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 HSPBP1Q9NZL4 362 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 RCOR1Q9UKL0 485 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ABCA5Q8WWZ7 1642 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ODC1P11926 461 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 NCAM1P13591 858 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ZNF177Q13360 481 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 STILQ15468 1287 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 GOLGA7BQ2TAP0 167 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 DCAF6Q58WW2 860 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ZNF614Q8N883 585 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 ARRDC4Q8NCT1 418 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 SMAD5Q99717 465 aaKnown RBP13.79□□□□□ -0.2
COL6A3-212ENST00000491769 WNT8AQ9H1J5 351 aa13.79□□□□□ -0.2
COL6A3-212ENST00000491769 JCADQ9P266 1359 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 CDC42BPGQ6DT37 1551 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 AGRPO00253 132 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 KRT8P05787 483 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 MLNP12872 115 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 SLC16A1P53985 500 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 LAMB3Q13751 1172 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 NCOA4Q13772 614 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 MAPRE2Q15555 327 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 C9orf131Q5VYM1 1079 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 PVALEFA0A1B0GWK0 134 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 E2F8A0AVK6 867 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 ZNF189O75820 626 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 ASS1P00966 412 aaKnown RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 RESTQ13127 1097 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 BFSP2Q13515 415 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 CUL3Q13618 768 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 MTFR1Q15390 333 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 PLA2G4FQ68DD2 849 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 ZNF438Q7Z4V0 828 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 STAG2Q8N3U4 1231 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 COPS7BQ9H9Q2 264 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 LARGE1O95461 756 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 EYA4O95677 639 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 NR3C2P08235 984 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 PRKCEQ02156 737 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 USP10Q14694 798 aaKnown RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 POLD3Q15054 466 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 MTHFD1LQ6UB35 978 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 RRN3P2A6NIE6 340 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 AP3B1O00203 1094 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 SLC9A1P19634 815 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 ABCE1P61221 599 aaKnown RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 UBA3Q8TBC4 463 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 FAM84BQ96KN1 310 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-212ENST00000491769 TMEM39BQ9GZU3 492 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 YY1AP1Q9H869 796 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 MAPKBP1O60336 1514 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 PLEKHF1Q96S99 279 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 CHST12Q9NRB3 414 aa13.78□□□□□ -0.2
COL6A3-212ENST00000491769 LRRIQ3A6PVS8 624 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-212ENST00000491769 HAUS5O94927 633 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 CKMP06732 381 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 VCLP18206 1134 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 IL10P22301 178 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 BRD2P25440 801 aaKnown RBP13.77□□□□□ -0.2
COL6A3-212ENST00000491769 TMED8Q6PL24 325 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-212ENST00000491769 ALG13Q9NP73 1137 aaKnown RBP13.77□□□□□ -0.2
COL6A3-212ENST00000491769 NCK2O43639 380 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 SEC24DO94855 1032 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-212ENST00000491769 SLC11A2P49281 568 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 ANGPT1Q15389 498 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 ALFQ53S48 1182 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 KCTD17Q8N5Z5 321 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 CEP70Q8NHQ1 597 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 SLC30A5Q8TAD4 765 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 KIF2CQ99661 725 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 NDEL1Q9GZM8 345 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 DEFB129Q9H1M3 183 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 STARD7Q9NQZ5 370 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 GTF2A1LQ9UNN4 478 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 DAGLAQ9Y4D2 1042 aa13.77□□□□□ -0.2
COL6A3-212ENST00000491769 ARFIP2P53365 341 aa13.77□□□□□ -0.21
COL6A3-212ENST00000491769 HIBCHQ6NVY1 386 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms