RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 ATG2AQ2TAZ0 1938 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 LAMA3Q16787 3333 aa11.75□□□□□ -0.53
VPS13D-210ENST00000489961 ANO9A1A5B4 782 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 LRRIQ3A6PVS8 624 aaPredicted RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 PIRO00625 290 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 IKBKBO14920 756 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 FSCN2O14926 492 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 GNA14O95837 355 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 URODP06132 367 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 KRT19P08727 400 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 CTSAP10619 480 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 POLR2BP30876 1174 aaKnown RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 PNPLA4P41247 253 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 BRCC3P46736 316 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 GLUD2P49448 558 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 TAF6P49848 677 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 ERVFC1P60507 584 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 RBP5P82980 135 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 CAMK1Q14012 370 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 NFKBIBQ15653 356 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 USP41Q3LFD5 358 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 CCDC40Q4G0X9 1142 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 FAM171A1Q5VUB5 890 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 PLPP4Q5VZY2 271 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 RNF168Q8IYW5 571 aaPredicted RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 C1orf127Q8N9H9 656 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 C3orf58Q8NDZ4 430 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 OR5B17Q8NGF7 314 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 POP1Q99575 1024 aaKnown RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 VN1R3Q9BXE9 311 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 ZBP1Q9H171 429 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 NSUN3Q9H649 340 aaKnown RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 MRPL17Q9NRX2 175 aaKnown RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 ARMCX3Q9UH62 379 aaPredicted RBP11.74□□□□□ -0.53
VPS13D-210ENST00000489961 AGAP1Q9UPQ3 857 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 PTPRJQ12913 1337 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 CHD9Q3L8U1 2897 aa11.74□□□□□ -0.53
VPS13D-210ENST00000489961 ARHGEF37A1IGU5 675 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 PPEF2O14830 753 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 STX10O60499 249 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 PHACTR2O75167 634 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 CXCL14O95715 111 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 EFEMP2O95967 443 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 IRS1P35568 1242 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 DLG4P78352 724 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 CLDN10P78369 228 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 TYRO3Q06418 890 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 BIRC3Q13489 604 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 TRPC3Q13507 836 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 SV2CQ496J9 727 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 PDXDC1Q6P996 788 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 CD300LGQ6UXG3 332 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 DSTYKQ6XUX3 929 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 TAS1R1Q7RTX1 841 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 TRAPPC11Q7Z392 1133 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 FRMD5Q7Z6J6 570 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 CEP57Q86XR8 500 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 MICALL1Q8N3F8 863 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 TMEM130Q8N3G9 435 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 LRRC52Q8N7C0 313 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 PLEKHO2Q8TD55 490 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 ZNF516Q92618 1163 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 SUSD3Q96L08 255 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 TTPALQ9BTX7 342 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 SRRTQ9BXP5 876 aaKnown RBP11.73□□□□□ -0.53
VPS13D-210ENST00000489961 GZF1Q9H116 711 aaPredicted RBP11.73□□□□□ -0.53
VPS13D-210ENST00000489961 CHST7Q9NS84 486 aa11.73□□□□□ -0.53
VPS13D-210ENST00000489961 SCN1AP35498 2009 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 I3L4J1 428 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 C2CD2LO14523 706 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 SYN3O14994 580 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 TRIM49P0CI25 452 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 TRIM49CP0CI26 452 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 CCDC192P0DO97 292 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 IGFBP6P24592 240 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 AARSP49588 968 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 LILRA4P59901 499 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 DSG1Q02413 1049 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 CREMQ03060 361 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 MYO1EQ12965 1108 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 PTPN14Q15678 1187 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 DCAF17Q5H9S7 520 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 TCERG1LQ5VWI1 586 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 GPR65Q8IYL9 337 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 MRPL43Q8N983 215 aaKnown RBP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 APPL2Q8NEU8 664 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 RIN2Q8WYP3 895 aaPredicted RBP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 BORCS6Q96GS4 357 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 FAM84AQ96KN4 292 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 EMILIN2Q9BXX0 1053 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS13D-210ENST00000489961 SIX4Q9UIU6 781 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 PCDHB8Q9UN66 801 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 STXBP5LQ9Y2K9 1186 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 IRAK3Q9Y616 596 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 VWA8A3KMH1 1905 aa11.72□□□□□ -0.53
VPS13D-210ENST00000489961 SYCE3A1L190 88 aa11.71□□□□□ -0.53
VPS13D-210ENST00000489961 FSD2A1L4K1 749 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms