RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 ZNF263O14978 683 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 XPOTO43592 962 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 PARNO95453 639 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 TFRCP02786 760 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ITGB3P05106 788 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 AKAP5P24588 427 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ASPAP45381 313 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 PTK2Q05397 1052 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 FAAP100Q0VG06 881 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 TRPC3Q13507 836 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 BMS1Q14692 1282 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 GPNMBQ14956 572 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 SLC18A3Q16572 532 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ARHGAP44Q17R89 818 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ZNF699Q32M78 642 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 TDRD12Q587J7 1177 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 SPOPLQ6IQ16 392 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 NYAP1Q6ZVC0 841 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ZNF571Q7Z3V5 609 aaPredicted RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ZNF598Q86UK7 904 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 REXO1L1PQ8IX06 675 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 LRRC52Q8N7C0 313 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ACRBPQ8NEB7 543 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 GSTCDQ8NEC7 633 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 EPS8L1Q8TE68 723 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 DIS3LQ8TF46 1054 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 LINC01599Q8WXQ3 324 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 PPP1R10Q96QC0 940 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ARID3AQ99856 593 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 FTHL17Q9BXU8 183 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 BCO2Q9BYV7 579 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 IFIH1Q9BYX4 1025 aaKnown RBP12.34□□□□□ -0.43
C9orf3-220ENST00000489318 PRDM10Q9NQV6 1147 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 RGS18Q9NS28 235 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 DPP3Q9NY33 737 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 TBX21Q9UL17 535 aa12.34□□□□□ -0.43
C9orf3-220ENST00000489318 ALPK3Q96L96 1907 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 ANO9A1A5B4 782 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 C9IYK1 514 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 PQBP1O60828 265 aaKnown RBP12.33□□□□□ -0.44
C9orf3-220ENST00000489318 NBNO60934 754 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 CXCL10P02778 98 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 ITGA4P13612 1032 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 LRPAP1P30533 357 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 POLR2BP30876 1174 aaKnown RBP12.33□□□□□ -0.44
C9orf3-220ENST00000489318 CLCN1P35523 988 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 ZNF132P52740 706 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 KRT83P78385 493 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 RBP5P82980 135 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 NAB2Q15742 525 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 TRIM60Q495X7 471 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 PLEKHG4Q58EX7 1191 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 AGMOQ6ZNB7 445 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 BEST2Q8NFU1 509 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 SLC30A5Q8TAD4 765 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 APBB2Q92870 758 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 TSPYL2Q9H2G4 693 aaPredicted RBP12.33□□□□□ -0.44
C9orf3-220ENST00000489318 C11orf49Q9H6J7 331 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 TUBGCP4Q9UGJ1 667 aa12.33□□□□□ -0.44
C9orf3-220ENST00000489318 NOCTQ9UK39 431 aaKnown RBP12.33□□□□□ -0.44
C9orf3-220ENST00000489318 MEIS3P2A8K0S8 358 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 DCDC2CA8MYV0 355 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 PIRO00625 290 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 AKR1B10O60218 316 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 IPO7O95373 1038 aaKnown RBP12.32□□□□□ -0.44
C9orf3-220ENST00000489318 VAV2P52735 878 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 FAM189BP81408 668 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 ARID5AQ03989 594 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 ZNF667Q5HYK9 610 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 GLRA4Q5JXX5 417 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 VPS36Q86VN1 386 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 ECHDC2Q86YB7 292 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 LNX1Q8TBB1 728 aaPredicted RBP12.32□□□□□ -0.44
C9orf3-220ENST00000489318 PGBD4Q96DM1 585 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 ADAM2Q99965 735 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 APOL6Q9BWW8 343 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 WNT8AQ9H1J5 351 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 DEF6Q9H4E7 631 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 UBN1Q9NPG3 1134 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 RRAGDQ9NQL2 400 aaPredicted RBP12.32□□□□□ -0.44
C9orf3-220ENST00000489318 SLC38A7Q9NVC3 462 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 PARP2Q9UGN5 583 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 BRCA2P51587 3418 aa12.32□□□□□ -0.44
C9orf3-220ENST00000489318 A0A087X0T9 212 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 PJA2O43164 708 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 EOMESO95936 686 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 KRT19P08727 400 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 FAM228BP0C875 321 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 CYP11B1P15538 503 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 MLH1P40692 756 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 PNPLA4P41247 253 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ARHGAP25P42331 645 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 PDE6CP51160 858 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 GUCY2FP51841 1108 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ATN1P54259 1190 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 YWHAEP62258 255 aaKnown RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 TLE2Q04725 743 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 GFPT1Q06210 699 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 SOX4Q06945 474 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 INCA1Q0VD86 236 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms