RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	MTHFD1	P11586	935 aa	Known RBP	6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	SEC24C	P53992	1094 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	SLFN5	Q08AF3	891 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	SCAP	Q12770	1279 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	CYP2A13	Q16696	494 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	GEN1	Q17RS7	908 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	PABPC1L	Q4VXU2	614 aa	Known RBP	6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	PPP4R3A	Q6IN85	833 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	OLFML1	Q6UWY5	402 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	FAM43A	Q8N2R8	423 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	ZCRB1	Q8TBF4	217 aa	Known RBP	6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	LINC00476	Q8WZB0	136 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	CRAMP1	Q96RY5	1269 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	VRK1	Q99986	396 aa	Predicted RBP	6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	PACSIN1	Q9BY11	444 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	RIOX1	Q9H6W3	641 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	HOMER2	Q9NSB8	354 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	TBCCD1	Q9NVR7	557 aa		6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	6.32	□□□□□ -1.4
PTPN4-212	ENST00000488896	KIAA0355	O15063	1070 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	SGTA	O43765	313 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	PPFIA2	O75334	1257 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	ZFPL1	O95159	310 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	FDXR	P22570	491 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	PTPRO	Q16827	1216 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	MIER2	Q8N344	545 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	PTCD3	Q96EY7	689 aa	Known RBP	6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	BOD1	Q96IK1	185 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	MRGPRX4	Q96LA9	322 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	SLC45A2	Q9UMX9	530 aa		6.31	□□□□□ -1.4
PTPN4-212	ENST00000488896	ADK	P55263	362 aa	Known RBP	6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	KRT85	P78386	507 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	TLE1	Q04724	770 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	MPP3	Q13368	585 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	RAB39A	Q14964	217 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	FLYWCH1	Q4VC44	716 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	KHDC1	Q4VXA5	237 aa	Known RBP	6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	BRDT	Q58F21	947 aa	Predicted RBP	6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	NSUN7	Q8NE18	718 aa	Known RBP	6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	COQ10A	Q96MF6	247 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	IMPG2	Q9BZV3	1241 aa		6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	UNKL	Q9H9P5	680 aa	Known RBP	6.3	□□□□□ -1.4
PTPN4-212	ENST00000488896	ANKRD62	A6NC57	917 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	LRRC14B	A6NHZ5	514 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	SNUPN	O95149	360 aa	Known RBP	6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	ESRRB	O95718	433 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	RPLP2	P05387	115 aa	Known RBP	6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	TGM1	P22735	817 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	CXCR5	P32302	372 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	VAV2	P52735	878 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	BLOC1S1	P78537	153 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	COLGALT2	Q8IYK4	626 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	SLC17A8	Q8NDX2	589 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	TMEM125	Q96AQ2	219 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	GPATCH3	Q96I76	525 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	DMRTA2	Q96SC8	542 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	SLC13A1	Q9BZW2	595 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	TMEM74B	Q9NUR3	256 aa		6.29	□□□□□ -1.4
PTPN4-212	ENST00000488896	SALL3	Q9BXA9	1300 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	TRGV11	A0A075B6L2	103 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	ZRANB2	O95218	330 aa	Known RBP eCLIP	6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	IBSP	P21815	317 aa	Predicted RBP	6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	MPL	P40238	635 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	TTC7B	Q86TV6	843 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	IL17RD	Q8NFM7	739 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	KLHL32	Q96NJ5	620 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	MED15	Q96RN5	788 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	AIFM2	Q9BRQ8	373 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	SYNPO2L	Q9H987	977 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	SLAMF7	Q9NQ25	335 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	VSX1	Q9NZR4	365 aa	Predicted RBP	6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	JKAMP	Q9P055	326 aa		6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	CFAP20	Q9Y6A4	193 aa	Known RBP	6.28	□□□□□ -1.4
PTPN4-212	ENST00000488896	ZAR1L	A6NP61	321 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	SLC43A1	O75387	559 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	MAL	P21145	153 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	SMARCA1	P28370	1054 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	ADRA1B	P35368	520 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	RECQL	P46063	649 aa	Predicted RBP	6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	DSC2	Q02487	901 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	ZNF844	Q08AG5	666 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	SNAPC2	Q13487	334 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	STRIP1	Q5VSL9	837 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896		Q6ZNX1	250 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	ZNF365	Q70YC5	407 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	TMIE	Q8NEW7	156 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	NSUN6	Q8TEA1	469 aa	Known RBP	6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	MAN1C1	Q9NR34	630 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	CALCOCO1	Q9P1Z2	691 aa		6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	LUC7L2	Q9Y383	392 aa	Known RBP	6.27	□□□□□ -1.41
PTPN4-212	ENST00000488896	MAST3	O60307	1309 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	IL33	O95760	270 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	TYRP1	P17643	537 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	PHKA1	P46020	1223 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	PTH2R	P49190	550 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	PSMC1	P62191	440 aa	Known RBP	6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	FPGS	Q05932	587 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	ERCC6L	Q2NKX8	1250 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	CD300E	Q496F6	205 aa	Predicted RBP	6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	SLC4A10	Q6U841	1118 aa		6.26	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms