RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 NAGPAQ9UK23 515 aa15.27■□□□□ 0.03
CUX1-209ENST00000487284 DDX3XO00571 662 aaKnown RBP eCLIP15.26■□□□□ 0.03
CUX1-209ENST00000487284 NBNO60934 754 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 URI1O94763 535 aaPredicted RBP15.26■□□□□ 0.03
CUX1-209ENST00000487284 NPTXRO95502 500 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 PIK3CAP42336 1068 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 POU5F1Q01860 360 aaKnown RBP15.26■□□□□ 0.03
CUX1-209ENST00000487284 NAB2Q15742 525 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 TWF2Q6IBS0 349 aaKnown RBP15.26■□□□□ 0.03
CUX1-209ENST00000487284 OR5B17Q8NGF7 314 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 PRDM5Q9NQX1 630 aaPredicted RBP15.26■□□□□ 0.03
CUX1-209ENST00000487284 C1orf112Q9NSG2 853 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 DUSP10Q9Y6W6 482 aa15.26■□□□□ 0.03
CUX1-209ENST00000487284 CTAGE9A4FU28 777 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 MGEA5O60502 916 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 OSTNP61366 133 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 BIRC3Q13489 604 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 DCAF4L1Q3SXM0 396 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 UBXN11Q5T124 520 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 TMEM192Q8IY95 271 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 LNX1Q8TBB1 728 aaPredicted RBP15.25■□□□□ 0.03
CUX1-209ENST00000487284 SECISBP2LQ93073 1101 aaKnown RBP15.25■□□□□ 0.03
CUX1-209ENST00000487284 TATDN2Q93075 761 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 NAPGQ99747 312 aaPredicted RBP15.25■□□□□ 0.03
CUX1-209ENST00000487284 PCDH10Q9P2E7 1040 aa15.25■□□□□ 0.03
CUX1-209ENST00000487284 TRIM43BA6NCK2 446 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 BTNL10A8MVZ5 291 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 TULP1O00294 542 aaPredicted RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 CTIFO43310 598 aaKnown RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 IL18RAPO95256 599 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 ITGB8P26012 769 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 KYAT1Q16773 422 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 WDR44Q5JSH3 913 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 ALKBH5Q6P6C2 394 aaKnown RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 RNF10Q8N5U6 811 aaKnown RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 TRIM43Q96BQ3 446 aaPredicted RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 PI4K2AQ9BTU6 479 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 CHST12Q9NRB3 414 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 MRFAP1Q9Y605 127 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 MACROD2A1Z1Q3 448 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 CCDC85CA6NKD9 419 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 KIAA0355O15063 1070 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 CLTAP09496 248 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 ZSCAN20P17040 1043 aaPredicted RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 DSC3Q14574 896 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 PLEKHG4Q58EX7 1191 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 GLYCTKQ8IVS8 523 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 DBF4BQ8NFT6 615 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 TRIM58Q8NG06 486 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 PACSIN1Q9BY11 444 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 TRIM6Q9C030 488 aaPredicted RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 NXF3Q9H4D5 531 aaKnown RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 RPF1Q9H9Y2 349 aaKnown RBP15.24■□□□□ 0.03
CUX1-209ENST00000487284 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.24■□□□□ 0.03
CUX1-209ENST00000487284 INTUQ9ULD6 942 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 HES2Q9Y543 173 aa15.24■□□□□ 0.03
CUX1-209ENST00000487284 SLU7O95391 586 aaKnown RBP15.23■□□□□ 0.03
CUX1-209ENST00000487284 TIMP1P01033 207 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 STAG3L1P0CL83 205 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 CXCL8P10145 99 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 NCOA4Q13772 614 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 TUBB2AQ13885 445 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 DUOXA2Q1HG44 320 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 TRAPPC11Q7Z392 1133 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 APBB1IPQ7Z5R6 666 aaPredicted RBP15.23■□□□□ 0.03
CUX1-209ENST00000487284 EFCAB13Q8IY85 973 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 EPS8L1Q8TE68 723 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 LINC01599Q8WXQ3 324 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 AGPAT1Q99943 283 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 ADAM2Q99965 735 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 TUBB2BQ9BVA1 445 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 MTMR12Q9C0I1 747 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 SNTG2Q9NY99 539 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 SALL4Q9UJQ4 1053 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 NOCTQ9UK39 431 aaKnown RBP15.23■□□□□ 0.03
CUX1-209ENST00000487284 CAPN6Q9Y6Q1 641 aa15.23■□□□□ 0.03
CUX1-209ENST00000487284 ANO9A1A5B4 782 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 MEFVO15553 781 aaPredicted RBP15.22■□□□□ 0.03
CUX1-209ENST00000487284 PHACTR2O75167 634 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 TACC1O75410 805 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 PARNO95453 639 aaKnown RBP15.22■□□□□ 0.03
CUX1-209ENST00000487284 ASS1P00966 412 aaKnown RBP15.22■□□□□ 0.03
CUX1-209ENST00000487284 CXCL10P02778 98 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 RAG1P15918 1043 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 TNFAIP3P21580 790 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 GRM5P41594 1212 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 NOP14P78316 857 aaKnown RBP15.22■□□□□ 0.03
CUX1-209ENST00000487284 AMPD2Q01433 879 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 SMYD5Q6GMV2 418 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 DEFB128Q7Z7B8 93 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 SMG8Q8ND04 991 aaKnown RBP15.22■□□□□ 0.03
CUX1-209ENST00000487284 SLC20A1Q8WUM9 679 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 APOBEC3GQ9HC16 384 aaKnown RBP15.22■□□□□ 0.03
CUX1-209ENST00000487284 FAM105AQ9NUU6 356 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 IPPQ9Y573 584 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 PCDHB2Q9Y5E7 798 aa15.22■□□□□ 0.03
CUX1-209ENST00000487284 DYNC1I1O14576 645 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 CYP26A1O43174 497 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 MOCS3O95396 460 aa15.21■□□□□ 0.03
CUX1-209ENST00000487284 H2AFZP0C0S5 128 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms