RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FKBPLQ9UIM3 349 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 PLXNA4Q9HCM2 1894 aa8.72□□□□□ -1.01
USP40-216ENST00000485943 PRRC2BQ5JSZ5 2229 aaKnown RBP8.72□□□□□ -1.01
USP40-216ENST00000485943 LAMA2P24043 3122 aaKnown RBP8.71□□□□□ -1.01
USP40-216ENST00000485943 SMIM28A0A1B0GU29 152 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 GOLGA8IPA6NC78 632 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 GOLGA8JA6NMD2 632 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 H7C4K7 107 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 RBAK-RBAKDNI3L0D1 243 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 PER2O15055 1255 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 PRPF40AO75400 957 aaKnown RBP8.71□□□□□ -1.02
USP40-216ENST00000485943 DDHD2O94830 711 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 FBXO45P0C2W1 286 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 KRT13P13646 458 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 TNNI1P19237 187 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 GARTP22102 1010 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 CASP1P29466 404 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 RPL9P32969 192 aaKnown RBP8.71□□□□□ -1.02
USP40-216ENST00000485943 PPP1R2P41236 205 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 SNRPFP62306 86 aaKnown RBP8.71□□□□□ -1.02
USP40-216ENST00000485943 SPAG1Q07617 926 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 MYO1EQ12965 1108 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 TRPC3Q13507 836 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 TPD52L1Q16890 204 aaPredicted RBP8.71□□□□□ -1.02
USP40-216ENST00000485943 LIN9Q5TKA1 542 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 FAM171A1Q5VUB5 890 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 CEP135Q66GS9 1140 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 DCLRE1AQ6PJP8 1040 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 LRRC55Q6ZSA7 311 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 COLGALT2Q8IYK4 626 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 CEP120Q8N960 986 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 APPL2Q8NEU8 664 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 ATXN2LQ8WWM7 1075 aaKnown RBP8.71□□□□□ -1.02
USP40-216ENST00000485943 RIN2Q8WYP3 895 aaPredicted RBP8.71□□□□□ -1.02
USP40-216ENST00000485943 RABGGTAQ92696 567 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 DNAJC19Q96DA6 116 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 SAAL1Q96ER3 474 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 CHAMP1Q96JM3 812 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 SNX27Q96L92 541 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 TSPAN18Q96SJ8 248 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 TTPALQ9BTX7 342 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 DNAI2Q9GZS0 605 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 ASB7Q9H672 318 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 PIDD1Q9HB75 910 aa8.71□□□□□ -1.02
USP40-216ENST00000485943 CLIC2O15247 247 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 EXTL3O43909 919 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 ADH1BP00325 375 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 GLUD1P00367 558 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 PIGRP01833 764 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 SOD2P04179 222 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 CCNYL3P0C7X3 344 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 DLATP10515 647 aaKnown RBP8.7□□□□□ -1.02
USP40-216ENST00000485943 CTSAP10619 480 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 SOX11P35716 441 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 CLCNKBP51801 687 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 ARPP19P56211 112 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 BIRC3Q13489 604 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 CLUL1Q15846 466 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 KNOP1Q1ED39 458 aaKnown RBP8.7□□□□□ -1.02
USP40-216ENST00000485943 TAS1R3Q7RTX0 852 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 CREBRFQ8IUR6 639 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 XXYLT1Q8NBI6 393 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 PABPC5Q96DU9 382 aaKnown RBP8.7□□□□□ -1.02
USP40-216ENST00000485943 HERC2P3Q9BVR0 1158 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 IMPG2Q9BZV3 1241 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 UBE2ZQ9H832 354 aaPredicted RBP8.7□□□□□ -1.02
USP40-216ENST00000485943 EVA1BQ9NVM1 165 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 CNTN3Q9P232 1028 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 POLIQ9UNA4 740 aa8.7□□□□□ -1.02
USP40-216ENST00000485943 A0A0B4J269 797 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 LACTBL1A8MY62 500 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 ANKRD63C9JTQ0 380 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 H3BQ06 376 aaPredicted RBP8.69□□□□□ -1.02
USP40-216ENST00000485943 PSMA7O14818 248 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 ODC1P11926 461 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 CPB1P15086 417 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 KCNE1P15382 129 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 POU3F3P20264 500 aaPredicted RBP8.69□□□□□ -1.02
USP40-216ENST00000485943 PROZP22891 400 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 PAX3P23760 479 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 IRS1P35568 1242 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 PNPLA4P41247 253 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 TNFSF9P41273 254 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 ERVFC1P60507 584 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 NR1H3Q13133 447 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 PNOCQ13519 176 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 PSMD5Q16401 504 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 TAF12Q16514 161 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 SV2CQ496J9 727 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 TJAP1Q5JTD0 557 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 JADE1Q6IE81 842 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 ZNF280DQ6N043 979 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.69□□□□□ -1.02
USP40-216ENST00000485943 ANKS3Q6ZW76 656 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 NT5DC4Q86YG4 428 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 CRIPAKQ8N1N5 446 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 THEM5Q8N1Q8 247 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 ELMOD1Q8N336 334 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 CSGALNACT2Q8N6G5 542 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 MRPL43Q8N983 215 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms