RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PRPF40AO75400 957 aaKnown RBP17.2■□□□□ 0.34
UPF3A-208ENST00000484246 HOXB8P17481 243 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-208ENST00000484246 KCNA5P22460 613 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 BRCC3P46736 316 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 NDUFV1P49821 464 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 DLX2Q07687 328 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-208ENST00000484246 CYP24A1Q07973 514 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 PSMD6Q15008 389 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 WDR49Q8IV35 697 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 LNX1Q8TBB1 728 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-208ENST00000484246 RIN2Q8WYP3 895 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-208ENST00000484246 IGFLR1Q9H665 355 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 DZANK1Q9NVP4 752 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 MTRRQ9UBK8 725 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 NUB1Q9Y5A7 615 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 BACE2Q9Y5Z0 518 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 CLIC2O15247 247 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 MAPK13O15264 365 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 CALUO43852 315 aaPredicted RBP17.19■□□□□ 0.34
UPF3A-208ENST00000484246 PAPLNO95428 1278 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 NR3C1P04150 777 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 PPP1R2P41236 205 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 CYP2J2P51589 502 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 CLCN4P51793 760 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 GUCY2FP51841 1108 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 TFF2Q03403 129 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 ENPEPQ07075 957 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 MRPL58Q14197 206 aaKnown RBP17.19■□□□□ 0.34
UPF3A-208ENST00000484246 EDRF1Q3B7T1 1238 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 TJAP1Q5JTD0 557 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 FOXR2Q6PJQ5 311 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 ANKS3Q6ZW76 656 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 SMRP1Q8NCR6 262 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 CXorf38Q8TB03 319 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 CACTINQ8WUQ7 758 aaKnown RBP17.19■□□□□ 0.34
UPF3A-208ENST00000484246 B3GALT6Q96L58 329 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 MFSD14AQ96MC6 490 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 PDE11AQ9HCR9 933 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 INTS13Q9NVM9 706 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 DPP3Q9NY33 737 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 ITGA11Q9UKX5 1188 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 PCDHB8Q9UN66 801 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 CITO14578 2027 aa17.19■□□□□ 0.34
UPF3A-208ENST00000484246 PDCD11Q14690 1871 aaKnown RBP17.18■□□□□ 0.34
UPF3A-208ENST00000484246 TBC1D4O60343 1298 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 EXOC3O60645 756 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 TKTP29401 623 aaKnown RBP17.18■□□□□ 0.34
UPF3A-208ENST00000484246 MCM4P33991 863 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 PNPLA4P41247 253 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 LILRA4P59901 499 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 CLDN10P78369 228 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 SMAD4Q13485 552 aaKnown RBP17.18■□□□□ 0.34
UPF3A-208ENST00000484246 PSMD5Q16401 504 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 ANKRD54Q6NXT1 300 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 LRRC52Q8N7C0 313 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 C1orf127Q8N9H9 656 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.18■□□□□ 0.34
UPF3A-208ENST00000484246 HDAC7Q8WUI4 952 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 CGRRF1Q99675 332 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 GZF1Q9H116 711 aaPredicted RBP17.18■□□□□ 0.34
UPF3A-208ENST00000484246 LMBRD1Q9NUN5 540 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 CD207Q9UJ71 328 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 MAN1B1Q9UKM7 699 aa17.18■□□□□ 0.34
UPF3A-208ENST00000484246 BARX2Q9UMQ3 279 aaPredicted RBP17.18■□□□□ 0.34
UPF3A-208ENST00000484246 ARHGEF37A1IGU5 675 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 H3BQ06 376 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 I3L4J1 428 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 C2CD2LO14523 706 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 PPEF2O14830 753 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 GLUD1P00367 558 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 TYMPP19971 482 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 KLRC2P26717 231 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 CA8P35219 290 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 PRCPP42785 496 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 MCCD1P59942 119 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 RBM10P98175 930 aaKnown RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 TFAMQ00059 246 aaKnown RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 VARS2Q5ST30 1063 aaKnown RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 CENPPQ6IPU0 288 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 SLC8B1Q6J4K2 584 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 LILRA6Q6PI73 481 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 SYCE2Q6PIF2 218 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 PRSS55Q6UWB4 352 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 ZC3H3Q8IXZ2 948 aaKnown RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 SMYD4Q8IYR2 804 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 ADSSL1Q8N142 457 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 TMEM130Q8N3G9 435 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 TRIML1Q8N9V2 468 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 APPL2Q8NEU8 664 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 ZNF560Q96MR9 790 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 CLSTN3Q9BQT9 956 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 OXCT2Q9BYC2 517 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-208ENST00000484246 RHOBTB2Q9BYZ6 727 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 MTMR12Q9C0I1 747 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 DPP7Q9UHL4 492 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 MYO7AQ13402 2215 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 PTPRJQ12913 1337 aa17.17■□□□□ 0.34
UPF3A-208ENST00000484246 GRXCR2A6NFK2 248 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 SPTLC1O15269 473 aa17.16■□□□□ 0.34
UPF3A-208ENST00000484246 OAZ2O95190 189 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms