RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 SUSD3Q96L08 255 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 ADAM7Q9H2U9 754 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 MAN1C1Q9NR34 630 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 PRKAG3Q9UGI9 489 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 C2CD2Q9Y426 696 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-206ENST00000478214 UBE4BO95155 1302 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 SPDYE4A6NLX3 237 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 TGM5O43548 720 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 IL18RAPO95256 599 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 RPN1P04843 607 aaKnown RBP16.9■□□□□ 0.3
HMGA1-206ENST00000478214 WEE2P0C1S8 567 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 ITIH3Q06033 890 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 DPYDQ12882 1025 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 CBX2Q14781 532 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-206ENST00000478214 BMT2Q1RMZ1 405 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 PDXDC1Q6P996 788 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 LILRA6Q6PI73 481 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 RSPO2Q6UXX9 243 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-206ENST00000478214 TMC5Q6UXY8 1006 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 GJD3Q8N144 294 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 GPD1LQ8N335 351 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 KIAA0895Q8NCT3 520 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 SFXN1Q9H9B4 322 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 AGPAT3Q9NRZ7 376 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 RBAKQ9NYW8 714 aaPredicted RBP16.9■□□□□ 0.3
HMGA1-206ENST00000478214 HSPBP1Q9NZL4 362 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 MTRRQ9UBK8 725 aa16.9■□□□□ 0.3
HMGA1-206ENST00000478214 SYN3O14994 580 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 CLIC2O15247 247 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 SSTR3P32745 418 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-206ENST00000478214 OR1D2P34982 312 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 PSMD2Q13200 908 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 VARS2Q5ST30 1063 aaKnown RBP16.89■□□□□ 0.29
HMGA1-206ENST00000478214 C9orf57Q5W0N0 161 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 CES5AQ6NT32 575 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 ANKS3Q6ZW76 656 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 CBWD2Q8IUF1 395 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 FMR1NBQ8N0W7 255 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-206ENST00000478214 FAM84AQ96KN4 292 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 BACE2Q9Y5Z0 518 aa16.89■□□□□ 0.29
HMGA1-206ENST00000478214 ANO9A1A5B4 782 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 C19orf67A6NJJ6 358 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 KIAA0391O15091 583 aaKnown RBP16.88■□□□□ 0.29
HMGA1-206ENST00000478214 RFPL2O75678 378 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 C1RP00736 705 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 AARSP49588 968 aaKnown RBP eCLIP16.88■□□□□ 0.29
HMGA1-206ENST00000478214 SNW1Q13573 536 aaKnown RBP16.88■□□□□ 0.29
HMGA1-206ENST00000478214 KNOP1Q1ED39 458 aaKnown RBP16.88■□□□□ 0.29
HMGA1-206ENST00000478214 HS2ST1Q7LGA3 356 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 KREMEN2Q8NCW0 462 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 ENGASEQ8NFI3 743 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 HDAC7Q8WUI4 952 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 PHF7Q9BWX1 381 aaPredicted RBP16.88■□□□□ 0.29
HMGA1-206ENST00000478214 PDE11AQ9HCR9 933 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 DPP3Q9NY33 737 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 CHMP5Q9NZZ3 219 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 PCDHB8Q9UN66 801 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 CDY1Q9Y6F8 540 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 PDCD11Q14690 1871 aaKnown RBP16.88■□□□□ 0.29
HMGA1-206ENST00000478214 VWA8A3KMH1 1905 aa16.88■□□□□ 0.29
HMGA1-206ENST00000478214 ZNF233A6NK53 670 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 M0QZQ0 153 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 PIRO00625 290 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 SPTLC1O15269 473 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 MTHFRP42898 656 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 CYP2J2P51589 502 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 LILRA4P59901 499 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 TFAMQ00059 246 aaKnown RBP16.87■□□□□ 0.29
HMGA1-206ENST00000478214 RAB33AQ14088 237 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 MRPL58Q14197 206 aaKnown RBP16.87■□□□□ 0.29
HMGA1-206ENST00000478214 ATAT1Q5SQI0 421 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 ELMSAN1Q6PJG2 1045 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 GPR149Q86SP6 731 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 NT5DC4Q86YG4 428 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 APPL2Q8NEU8 664 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 RPGRIP1Q96KN7 1286 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 RIPOR3Q96MK2 946 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 POP1Q99575 1024 aaKnown RBP16.87■□□□□ 0.29
HMGA1-206ENST00000478214 PLEKHA4Q9H4M7 779 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 POMKQ9H5K3 350 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 DPP7Q9UHL4 492 aa16.87■□□□□ 0.29
HMGA1-206ENST00000478214 TIMM13Q9Y5L4 95 aaPredicted RBP16.87■□□□□ 0.29
HMGA1-206ENST00000478214 H7C4K7 107 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 TBC1D4O60343 1298 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 RHOBTB3O94955 611 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 SNRPFP62306 86 aaKnown RBP16.86■□□□□ 0.29
HMGA1-206ENST00000478214 FAM160A1Q05DH4 1040 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 LMBRD2Q68DH5 695 aaPredicted RBP16.86■□□□□ 0.29
HMGA1-206ENST00000478214 DSTYKQ6XUX3 929 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 RDH13Q8NBN7 331 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 CMASQ8NFW8 434 aaPredicted RBP16.86■□□□□ 0.29
HMGA1-206ENST00000478214 KHSRPQ92945 711 aaKnown RBP eCLIP16.86■□□□□ 0.29
HMGA1-206ENST00000478214 CCDC47Q96A33 483 aaKnown RBP16.86■□□□□ 0.29
HMGA1-206ENST00000478214 SENP8Q96LD8 212 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 NECTIN4Q96NY8 510 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 KIAA1586Q9HCI6 787 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 FBXL5Q9UKA1 691 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 FBXW11Q9UKB1 542 aa16.86■□□□□ 0.29
HMGA1-206ENST00000478214 PLXNA3P51805 1871 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms