RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CUL5Q93034 780 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 DDX27Q96GQ7 796 aaKnown RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 NLRP4Q96MN2 994 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 RNF41Q9H4P4 317 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 PSTPIP2Q9H939 334 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 KIAA1522Q9P206 1035 aaPredicted RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 SLC6A14Q9UN76 642 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 APOBEC2Q9Y235 224 aaKnown RBP5.39□□□□□ -1.55
USP4-209ENST00000475873 ARID2Q68CP9 1835 aa5.39□□□□□ -1.55
USP4-209ENST00000475873 MYO18AQ92614 2054 aaKnown RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 CLEC18AA5D8T8 446 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 FAM205CA6NFA0 338 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ZNF316A6NFI3 1004 aaPredicted RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 I3L4J1 428 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ARHGAP33O14559 1287 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 PTGESO14684 152 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ZNF197O14709 1029 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ADAMTS3O15072 1205 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ATG13O75143 517 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 TADA2AO75478 443 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ABLIM3O94929 683 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 VNN2O95498 520 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 SERPINF2P08697 491 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 MYL4P12829 197 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 TKTP29401 623 aaKnown RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 IL12RB1P42701 662 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 RIPPLY3P57055 190 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 CXADRP78310 365 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 SPIRE1Q08AE8 756 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 MYO1EQ12965 1108 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 TRAF1Q13077 416 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 NMIQ13287 307 aaPredicted RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 NBR1Q14596 966 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 MAP7D1Q3KQU3 841 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 USP39Q53GS9 565 aaKnown RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 CCDC178Q5BJE1 867 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 TRIM68Q6AZZ1 485 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 CLEC18BQ6UXF7 455 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 TMEM92Q6UXU6 159 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 RTL10Q7L3V2 364 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 PRICKLE2Q7Z3G6 844 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 KRT25Q7Z3Z0 450 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 ZNF410Q86VK4 478 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 RHPN2Q8IUC4 686 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 YAF2Q8IY57 180 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 DEFB119Q8N690 84 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 PDCD7Q8N8D1 485 aaKnown RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 CLEC18CQ8NCF0 446 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 FAM200AQ8TCP9 573 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 CRYGNQ8WXF5 182 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 WBP1Q96G27 269 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 CNOT6LQ96LI5 555 aaKnown RBP5.38□□□□□ -1.55
USP4-209ENST00000475873 ARID3AQ99856 593 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 FAM83CQ9BQN1 747 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 HELLSQ9NRZ9 838 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 KLK14Q9P0G3 267 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 CEP131Q9UPN4 1083 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 INSL5Q9Y5Q6 135 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 SALL3Q9BXA9 1300 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 NF1P21359 2839 aa5.38□□□□□ -1.55
USP4-209ENST00000475873 NAV3Q8IVL0 2385 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 MTORP42345 2549 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 MYLKQ15746 1914 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 A0A1W2PRU2 124 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SPDYE3A6NKU9 549 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ENO4A6NNW6 628 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 IPO5O00410 1097 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 TSPAN1O60635 241 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PLEKHA8P1O95397 391 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 LRG1P02750 347 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PRKCBP05771 671 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ARSAP15289 507 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 CR2P20023 1033 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ADSSP30520 456 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 GALK1P51570 392 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ATXN3P54252 364 aaPredicted RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 NFKB2Q00653 900 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SEMG2Q02383 582 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 GFPT1Q06210 699 aaPredicted RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 GRSF1Q12849 480 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP4-209ENST00000475873 GRIK3Q13003 919 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SLC14A1Q13336 389 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SMAD1Q15797 465 aaKnown RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 AMHR2Q16671 573 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 DUOXA1Q1HG43 343 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ITPRIPL2Q3MIP1 535 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 MTERF2Q49AM1 385 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 MCMDC2Q4G0Z9 681 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 PKDCCQ504Y2 493 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ARHGAP29Q52LW3 1261 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 C4orf17Q53FE4 359 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 LYSMD4Q5XG99 296 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SLC8B1Q6J4K2 584 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 ZNF746Q6NUN9 644 aaPredicted RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 GAREM2Q75VX8 874 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 LPCAT2Q7L5N7 544 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 C11orf74Q86VG3 221 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 CDR2LQ86X02 465 aaPredicted RBP5.37□□□□□ -1.55
USP4-209ENST00000475873 SLC41A1Q8IVJ1 513 aa5.37□□□□□ -1.55
USP4-209ENST00000475873 SFTPA1Q8IWL2 248 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms