RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 SLC4A7Q9Y6M7 1214 aa11.12□□□□□ -0.63
COL12A1-206ENST00000474564 TBKBP1A7MCY6 615 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 INPPL1O15357 1258 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 HUS1O60921 280 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 IPO7O95373 1038 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 STAU1O95793 577 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 ASS1P00966 412 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 LRPAP1P30533 357 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 CASP14P31944 242 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 PBX1P40424 430 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 USP8P40818 1118 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 ALDH7A1P49419 539 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 MYL6P60660 151 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 NOP14P78316 857 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 GCNT1Q02742 428 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 KCNMA1Q12791 1236 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 WDR72Q3MJ13 1102 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 SFMBT2Q5VUG0 894 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 C9orf57Q5W0N0 161 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 DSTYKQ6XUX3 929 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 ZNF365Q70YC5 407 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 RRAGAQ7L523 313 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 C1orf127Q8N9H9 656 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 CCDC112Q8NEF3 446 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 PHOSPHO2Q8TCD6 241 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 TOP1MTQ969P6 601 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 PPP1R10Q96QC0 940 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 SLC9A7Q96T83 725 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 YME1L1Q96TA2 773 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 NIF3L1Q9GZT8 377 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 CYP3A43Q9HB55 503 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 NLRC4Q9NPP4 1024 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 NXF1Q9UBU9 619 aaKnown RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 DSEQ9UL01 958 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 ZMYND8Q9ULU4 1186 aaPredicted RBP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 FAN1Q9Y2M0 1017 aa11.11□□□□□ -0.63
COL12A1-206ENST00000474564 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.11□□□□□ -0.63
COL12A1-206ENST00000474564 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 KPNA7A9QM74 516 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 PTGESO14684 152 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 TADA2AO75478 443 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 B3GAT3O94766 335 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 CST3P01034 146 aaPredicted RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 FAM163BP0C2L3 166 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 FGFR1P11362 822 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 FERP16591 822 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 ITGB8P26012 769 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 OR1G1P47890 313 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 WDR5P61964 334 aaKnown RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 ELAVL2Q12926 359 aaKnown RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 CUL2Q13617 745 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 BTG3Q14201 252 aaPredicted RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 BMS1Q14692 1282 aaKnown RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 ASIC2Q16515 512 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 ARHGAP44Q17R89 818 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 DPH6Q7L8W6 267 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 APPL2Q8NEU8 664 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 LINC01599Q8WXQ3 324 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 HERVK_113Q902F9 699 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 SYN2Q92777 582 aaPredicted RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 C18orf25Q96B23 403 aaPredicted RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 ZMAT2Q96NC0 199 aaKnown RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 PANX2Q96RD6 677 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 TMEM175Q9BSA9 504 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 NAA15Q9BXJ9 866 aaKnown RBP11.1□□□□□ -0.63
COL12A1-206ENST00000474564 SNX25Q9H3E2 840 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 VRTNQ9H8Y1 702 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 TBC1D13Q9NVG8 400 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 STK39Q9UEW8 545 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 TUBGCP4Q9UGJ1 667 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 ZKSCAN5Q9Y2L8 839 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 INSL6Q9Y581 213 aa11.1□□□□□ -0.63
COL12A1-206ENST00000474564 PTPRJQ12913 1337 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 ANO9A1A5B4 782 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 CASTOR2A6NHX0 329 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 ESPNB1AK53 854 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 PODXLO00592 558 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 PIRO00625 290 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 DGKIO75912 1065 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 VNN1O95497 513 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 KRT5P13647 590 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 WNT7BP56706 349 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 PTK2Q05397 1052 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 DRAP1Q14919 205 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-206ENST00000474564 CLLU1OSQ5K130 101 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL12A1-206ENST00000474564 CMTR2Q8IYT2 770 aaKnown RBP11.09□□□□□ -0.63
COL12A1-206ENST00000474564 THEM5Q8N1Q8 247 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 TMEM86AQ8N2M4 240 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 TXLNBQ8N3L3 684 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 LMO3Q8TAP4 145 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 SEMA4DQ92854 862 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 ZNF830Q96NB3 372 aaPredicted RBP11.09□□□□□ -0.63
COL12A1-206ENST00000474564 PI4K2AQ9BTU6 479 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 PDCL3Q9H2J4 239 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 DEF6Q9H4E7 631 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 LUC7LQ9NQ29 371 aaKnown RBP11.09□□□□□ -0.63
COL12A1-206ENST00000474564 PCDHB4Q9Y5E5 795 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 SNX9Q9Y5X1 595 aa11.09□□□□□ -0.63
COL12A1-206ENST00000474564 MEIS3P2A8K0S8 358 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms