RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 HIDE1A8MVS5 230 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 I3L4J1 428 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 PER2O15055 1255 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 AKAP3O75969 853 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 ITGB3P05106 788 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 EPB41P11171 864 aaKnown RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 KRT13P13646 458 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 IGFBP6P24592 240 aaPredicted RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 NRIP1P48552 1158 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 PMS1P54277 932 aaKnown RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 DSG1Q02413 1049 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 PAK1Q13153 545 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 PTPN14Q15678 1187 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 CCDC183Q5T5S1 534 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 DSTYKQ6XUX3 929 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 EP400NLQ6ZTU2 488 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 RNF168Q8IYW5 571 aaPredicted RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 C1orf127Q8N9H9 656 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 MLKLQ8NB16 471 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 OR5B17Q8NGF7 314 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 RIN2Q8WYP3 895 aaPredicted RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 SYAP1Q96A49 352 aaPredicted RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 POP1Q99575 1024 aaKnown RBP13.41□□□□□ -0.26
DDX56-209ENST00000473924 TTPALQ9BTX7 342 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 EMILIN2Q9BXX0 1053 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 CHST7Q9NS84 486 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 ITGA11Q9UKX5 1188 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 AGAP1Q9UPQ3 857 aa13.41□□□□□ -0.26
DDX56-209ENST00000473924 PTPRJQ12913 1337 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 ANO9A1A5B4 782 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 PIRO00625 290 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 PPEF2O14830 753 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 MAPK13O15264 365 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 PHACTR2O75167 634 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 EFEMP2O95967 443 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 PAX3P23760 479 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 TKTP29401 623 aaKnown RBP13.4□□□□□ -0.26
DDX56-209ENST00000473924 POLR2BP30876 1174 aaKnown RBP13.4□□□□□ -0.26
DDX56-209ENST00000473924 PNPLA4P41247 253 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 TAF6P49848 677 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 VAMP7P51809 220 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 STX17P56962 302 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 NLRP12P59046 1061 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 RBP5P82980 135 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 HYAL1Q12794 435 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 PDXDC1Q6P996 788 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 SASS6Q6UVJ0 657 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 CD300LGQ6UXG3 332 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 INTS8Q75QN2 995 aaKnown RBP13.4□□□□□ -0.26
DDX56-209ENST00000473924 TMC2Q8TDI7 906 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 PARD3BQ8TEW8 1205 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 FAM84AQ96KN4 292 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 SUSD3Q96L08 255 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 ZNF560Q96MR9 790 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 CDCA3Q99618 268 aaPredicted RBP13.4□□□□□ -0.26
DDX56-209ENST00000473924 MKNK1Q9BUB5 465 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 DACH1Q9UI36 760 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 IRAK3Q9Y616 596 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 ATG2AQ2TAZ0 1938 aa13.4□□□□□ -0.26
DDX56-209ENST00000473924 FSD2A1L4K1 749 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 LRRIQ3A6PVS8 624 aaPredicted RBP13.39□□□□□ -0.27
DDX56-209ENST00000473924 SYN3O14994 580 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 SLC16A3O15427 465 aaKnown RBP13.39□□□□□ -0.27
DDX56-209ENST00000473924 NCK2O43639 380 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 CLSTN1O94985 981 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 FGFR3P22607 806 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 KLRC2P26717 231 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 AP3M2P53677 418 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 LILRA4P59901 499 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 CREMQ03060 361 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 BFSP1Q12934 665 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 MYO1EQ12965 1108 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 BIRC3Q13489 604 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 TRPC3Q13507 836 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 SV2CQ496J9 727 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 RTP2Q5QGT7 225 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 KIAA0319Q5VV43 1072 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 TTI2Q6NXR4 508 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 CAVIN1Q6NZI2 390 aaKnown RBP13.39□□□□□ -0.27
DDX56-209ENST00000473924 PRSS55Q6UWB4 352 aaPredicted RBP13.39□□□□□ -0.27
DDX56-209ENST00000473924 TRAPPC11Q7Z392 1133 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 APPL2Q8NEU8 664 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 PLEKHO2Q8TD55 490 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.39□□□□□ -0.27
DDX56-209ENST00000473924 CLDND1Q9NY35 253 aa13.39□□□□□ -0.27
DDX56-209ENST00000473924 ARHGEF37A1IGU5 675 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 KPNA7A9QM74 516 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 FGFR1OPO95684 399 aaKnown RBP13.38□□□□□ -0.27
DDX56-209ENST00000473924 ADH1AP07327 375 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 CNPP09543 421 aaKnown RBP13.38□□□□□ -0.27
DDX56-209ENST00000473924 ODC1P11926 461 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 GTF2F1P35269 517 aaKnown RBP eCLIP13.38□□□□□ -0.27
DDX56-209ENST00000473924 DLG4P78352 724 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 PSMD5Q16401 504 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 DUSP6Q16828 381 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 TPD52L1Q16890 204 aaPredicted RBP13.38□□□□□ -0.27
DDX56-209ENST00000473924 DPCR1Q3MIW9 517 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 CCDC40Q4G0X9 1142 aa13.38□□□□□ -0.27
DDX56-209ENST00000473924 LLGL2Q6P1M3 1020 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms