RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 SNW1Q13573 536 aaKnown RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 RARS2Q5T160 578 aaKnown RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 RSPO2Q6UXX9 243 aaPredicted RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 SPATA31D4Q6ZUB0 917 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 PALB2Q86YC2 1186 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 ENGASEQ8NFI3 743 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 NOC3LQ8WTT2 800 aaKnown RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 TSPAN18Q96SJ8 248 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 MAN1C1Q9NR34 630 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 RBAKQ9NYW8 714 aaPredicted RBP20.54■□□□□ 0.88
PTCD3-210ENST00000473829 HSPBP1Q9NZL4 362 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 FAM50BQ9Y247 325 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 C2CD2Q9Y426 696 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 NUB1Q9Y5A7 615 aa20.54■□□□□ 0.88
PTCD3-210ENST00000473829 CLIC2O15247 247 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 TGM5O43548 720 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 XPOTO43592 962 aaKnown RBP20.53■□□□□ 0.88
PTCD3-210ENST00000473829 TRAPPC3O43617 180 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 LDHAP00338 332 aaKnown RBP20.53■□□□□ 0.88
PTCD3-210ENST00000473829 MCM4P33991 863 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 CREMQ03060 361 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 GPD1LQ8N335 351 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 BEST2Q8NFU1 509 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 SUSD3Q96L08 255 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 MTRRQ9UBK8 725 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 DENND4AQ7Z401 1863 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 BDP1A6H8Y1 2624 aa20.53■□□□□ 0.88
PTCD3-210ENST00000473829 GOLGA6L4A6NEF3 574 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 IL18RAPO95256 599 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 AARSP49588 968 aaKnown RBP eCLIP20.52■□□□□ 0.88
PTCD3-210ENST00000473829 VARS2Q5ST30 1063 aaKnown RBP20.52■□□□□ 0.88
PTCD3-210ENST00000473829 C9orf57Q5W0N0 161 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 LILRA6Q6PI73 481 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 CBWD2Q8IUF1 395 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 ADHFE1Q8IWW8 467 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 ADAM7Q9H2U9 754 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 SFXN1Q9H9B4 322 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 PDE11AQ9HCR9 933 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 CHMP5Q9NZZ3 219 aa20.52■□□□□ 0.88
PTCD3-210ENST00000473829 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.52■□□□□ 0.88
PTCD3-210ENST00000473829 ANO9A1A5B4 782 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 TNFRSF10AO00220 468 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 SYN3O14994 580 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 KIAA0391O15091 583 aaKnown RBP20.51■□□□□ 0.87
PTCD3-210ENST00000473829 SPTLC1O15269 473 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 GADD45BO75293 160 aaPredicted RBP20.51■□□□□ 0.87
PTCD3-210ENST00000473829 RHOBTB3O94955 611 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 FAM160A1Q05DH4 1040 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 PSMD2Q13200 908 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 CBX2Q14781 532 aaPredicted RBP20.51■□□□□ 0.87
PTCD3-210ENST00000473829 KNOP1Q1ED39 458 aaKnown RBP20.51■□□□□ 0.87
PTCD3-210ENST00000473829 SCARA3Q6AZY7 606 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 PDXDC1Q6P996 788 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 TMC5Q6UXY8 1006 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 ANKS3Q6ZW76 656 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 PRKAG3Q9UGI9 489 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 PCDHB8Q9UN66 801 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 PTPRJQ12913 1337 aa20.51■□□□□ 0.87
PTCD3-210ENST00000473829 C19orf67A6NJJ6 358 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 M0QZQ0 153 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 TULP1O00294 542 aaPredicted RBP20.5■□□□□ 0.87
PTCD3-210ENST00000473829 PIRO00625 290 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 CYP2J2P51589 502 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 ITIH3Q06033 890 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 PNOCQ13519 176 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 MRPL58Q14197 206 aaKnown RBP20.5■□□□□ 0.87
PTCD3-210ENST00000473829 POMKQ9H5K3 350 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 DPP3Q9NY33 737 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 FBXW11Q9UKB1 542 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 BACE2Q9Y5Z0 518 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 CDY1Q9Y6F8 540 aa20.5■□□□□ 0.87
PTCD3-210ENST00000473829 TBC1D4O60343 1298 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 RFPL2O75678 378 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 OR1D2P34982 312 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 LILRA4P59901 499 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 TFAMQ00059 246 aaKnown RBP20.49■□□□□ 0.87
PTCD3-210ENST00000473829 LMBRD2Q68DH5 695 aaPredicted RBP20.49■□□□□ 0.87
PTCD3-210ENST00000473829 HS2ST1Q7LGA3 356 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 NT5DC4Q86YG4 428 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 C12orf56Q8IXR9 622 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 GJD3Q8N144 294 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 KREMEN2Q8NCW0 462 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 KHSRPQ92945 711 aaKnown RBP eCLIP20.49■□□□□ 0.87
PTCD3-210ENST00000473829 KCTD10Q9H3F6 313 aa20.49■□□□□ 0.87
PTCD3-210ENST00000473829 TIMM13Q9Y5L4 95 aaPredicted RBP20.49■□□□□ 0.87
PTCD3-210ENST00000473829 ZNF233A6NK53 670 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 SPDYE4A6NLX3 237 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 C1RP00736 705 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 SNRPFP62306 86 aaKnown RBP20.48■□□□□ 0.87
PTCD3-210ENST00000473829 RAB33AQ14088 237 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 KCNB1Q14721 858 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 SNRNP35Q16560 246 aaKnown RBP20.48■□□□□ 0.87
PTCD3-210ENST00000473829 CES5AQ6NT32 575 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 GPR149Q86SP6 731 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 C1orf127Q8N9H9 656 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 RDH13Q8NBN7 331 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 CMASQ8NFW8 434 aaPredicted RBP20.48■□□□□ 0.87
PTCD3-210ENST00000473829 CXorf38Q8TB03 319 aa20.48■□□□□ 0.87
PTCD3-210ENST00000473829 ERCC4Q92889 916 aaPredicted RBP20.48■□□□□ 0.87
PTCD3-210ENST00000473829 PHF7Q9BWX1 381 aaPredicted RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms