RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	XKR4	Q5GH76	650 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	VARS2	Q5ST30	1063 aa	Known RBP	12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZBTB41	Q5SVQ8	909 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZNF280D	Q6N043	979 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	GET4	Q7L5D6	327 aa	Predicted RBP	12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	PLCD3	Q8N3E9	789 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	C3orf58	Q8NDZ4	430 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	LNX1	Q8TBB1	728 aa	Predicted RBP	12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	HDAC7	Q8WUI4	952 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	FAM213A	Q9BRX8	229 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	HAPLN2	Q9GZV7	340 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	ST6GALNAC4	Q9H4F1	302 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	MAGEF1	Q9HAY2	307 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	OLFML3	Q9NRN5	406 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZDHHC7	Q9NXF8	308 aa		12.51	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZNF638	Q14966	1978 aa	Known RBP	12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	TTC26	A0AVF1	554 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	ARHGEF37	A1IGU5	675 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	CCL16	O15467	120 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	LRG1	P02750	347 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	GUCY2F	P51841	1108 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZXDA	P98168	799 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	YWHAH	Q04917	246 aa	Predicted RBP	12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	AXDND1	Q5T1B0	1012 aa	Predicted RBP	12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	RESP18	Q5W5W9	173 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	SLC39A4	Q6P5W5	647 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	BMP8A	Q7Z5Y6	402 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	ELMOD1	Q8N336	334 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	SLC7A14	Q8TBB6	771 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	CCDC47	Q96A33	483 aa	Known RBP	12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	SAAL1	Q96ER3	474 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	TSPAN18	Q96SJ8	248 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	FIZ1	Q96SL8	496 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	CLSTN3	Q9BQT9	956 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	BLZF1	Q9H2G9	400 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	PCIF1	Q9H4Z3	704 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	MTRR	Q9UBK8	725 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	FBXW11	Q9UKB1	542 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	CPSF3	Q9UKF6	684 aa	Known RBP	12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	KCNH3	Q9ULD8	1083 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	CLUH	O75153	1309 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	DOCK8	Q8NF50	2099 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	TRIO	O75962	3097 aa		12.5	□□□□□ -0.41
CPNE1-222	ENST00000473373	GOLGA8IP	A6NC78	632 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	GOLGA6L4	A6NEF3	574 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	GOLGA8J	A6NMD2	632 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZMYND10	O75800	440 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	IL18RAP	O95256	599 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	EFEMP2	O95967	443 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	NFIC	P08651	508 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	ODC1	P11926	461 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	CYP3A5	P20815	502 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	CASP5	P51878	434 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	PTPN5	P54829	565 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	TFAM	Q00059	246 aa	Known RBP	12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	MTMR3	Q13615	1198 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	FAM26F	Q5R3K3	315 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	CYP26C1	Q6V0L0	522 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	METTL23	Q86XA0	190 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	SUGP1	Q8IWZ8	645 aa	Known RBP	12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	CMAS	Q8NFW8	434 aa	Predicted RBP	12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	CACTIN	Q8WUQ7	758 aa	Known RBP	12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	SUSD3	Q96L08	255 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	PRKD2	Q9BZL6	878 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	TRIM9	Q9C026	710 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	ASB7	Q9H672	318 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	EXOC1	Q9NV70	894 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	KBTBD4	Q9NVX7	518 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	RBAK	Q9NYW8	714 aa	Predicted RBP	12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	LIMD1	Q9UGP4	676 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	PCDHB8	Q9UN66	801 aa		12.49	□□□□□ -0.41
CPNE1-222	ENST00000473373	TSC2	P49815	1807 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373		A0A1B0GVL5	298 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	ADAM12	O43184	909 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	ABCB7	O75027	752 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	ASGR2	P07307	311 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	KRT19	P08727	400 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	HNRNPA1	P09651	372 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	TMEM191B	P0C7N4	346 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	GART	P22102	1010 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	RFX1	P22670	979 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	IGFBP6	P24592	240 aa	Predicted RBP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	KCNA1	Q09470	495 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	TCF15	Q12870	199 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	RAB33A	Q14088	237 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	E2F4	Q16254	413 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	PTPN21	Q16825	1174 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	UNC13D	Q70J99	1090 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	GRASP	Q7Z6J2	395 aa	Predicted RBP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	NELFCD	Q8IXH7	590 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	GPD1L	Q8N335	351 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	FBXL6	Q8N531	539 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	LEO1	Q8WVC0	666 aa	Predicted RBP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	KCNN1	Q92952	543 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	HPS3	Q969F9	1004 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	CCDC34	Q96HJ3	373 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	ZNF560	Q96MR9	790 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	SCAND2P	Q9GZW5	306 aa	Predicted RBP	12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	IKZF4	Q9H2S9	585 aa		12.48	□□□□□ -0.41
CPNE1-222	ENST00000473373	CYP4F11	Q9HBI6	524 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms