RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ROR1Q01973 937 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 ENOX2Q16206 610 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 ZC2HC1CQ53FD0 456 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 SLC39A4Q6P5W5 647 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 SFR1Q86XK3 245 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 MAP4K3Q8IVH8 894 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 GPR152Q8TDT2 470 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 FAM212AQ96EL1 285 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 SUSD3Q96L08 255 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 RTP3Q9BQQ7 232 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 MSTO1Q9BUK6 570 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 RPF1Q9H9Y2 349 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 PLEKHA5Q9HAU0 1116 aa17.11■□□□□ 0.33
CCDC88B-205ENST00000472524 TSC2P49815 1807 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 ANHXE9PGG2 379 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 H7C4K7 107 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 SRFP11831 508 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 LAMP2P13473 410 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 HOXA9P31269 272 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 GUCY2FP51841 1108 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 GTF2BQ00403 316 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 SLC39A14Q15043 492 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 KYAT1Q16773 422 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 FOXD4L5Q5VV16 416 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 SV2BQ7L1I2 683 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 FOXD4L4Q8WXT5 416 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 DDX12PQ92771 950 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 PANK2Q9BZ23 570 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 TBC1D17Q9HA65 648 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 HCFC1R1Q9NWW0 138 aa17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 UBQLN1Q9UMX0 589 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-205ENST00000472524 A0A0B4J269 797 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 WDR27A2RRH5 827 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 MYMKA6NI61 221 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 TISP43B9A030 160 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 ANKRD63C9JTQ0 380 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 FAM189A1O60320 539 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 ABCD1P33897 745 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 STAT6P42226 847 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 HTR4Q13639 388 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 STK38Q15208 465 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 UVSSAQ2YD98 709 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 CTXN3Q4LDR2 81 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 SLC8B1Q6J4K2 584 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 HSCBQ8IWL3 235 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 ADSSL1Q8N142 457 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 NXPE3Q969Y0 559 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 TBC1D7Q9P0N9 293 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 FBXL5Q9UKA1 691 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 NUMBLQ9Y6R0 609 aa17.09■□□□□ 0.33
CCDC88B-205ENST00000472524 A0A087X0B3 334 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 XPOTO43592 962 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 RFX1P22670 979 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 LRPAP1P30533 357 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 ELF1P32519 619 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 ZBTB6Q15916 424 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 ADALQ6DHV7 355 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 ZNF280DQ6N043 979 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 CCDC73Q6ZRK6 1079 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 APPL2Q8NEU8 664 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 ZNF461Q8TAF7 563 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 SNX21Q969T3 373 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 RPP25Q9BUL9 199 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 IKZF4Q9H2S9 585 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 MRPL44Q9H9J2 332 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 DNMT3BQ9UBC3 853 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 PCDHB8Q9UN66 801 aa17.08■□□□□ 0.32
CCDC88B-205ENST00000472524 PRRG1O14668 218 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 TBC1D4O60343 1298 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 LRG1P02750 347 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 DCNP07585 359 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 HSP90AA1P07900 732 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 IDEP14735 1019 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 CYP3A5P20815 502 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 NASPP49321 788 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 ACOT2P49753 483 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 MRPL58Q14197 206 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 PABPC1LQ4VXU2 614 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 JADE1Q6IE81 842 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 ZNF720Q7Z2F6 126 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 PDILTQ8N807 584 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 BEST2Q8NFU1 509 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 ITFG1Q8TB96 612 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 DNAJC19Q96DA6 116 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 ST6GALNAC4Q9H4F1 302 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 CYP4F11Q9HBI6 524 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 ARHGEF3Q9NR81 526 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 TFIP11Q9UBB9 837 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 SEL1LQ9UBV2 794 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 CPSF3Q9UKF6 684 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 CDH7Q9ULB5 785 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 TIMM13Q9Y5L4 95 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 MORC2Q9Y6X9 1032 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 MIA3Q5JRA6 1907 aa17.07■□□□□ 0.32
CCDC88B-205ENST00000472524 PPEF2O14830 753 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 ABLIM3O94929 683 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 GCNT3O95395 438 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 NFICP08651 508 aa17.06■□□□□ 0.32
CCDC88B-205ENST00000472524 POU2F2P09086 479 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms