RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 LCMT1Q9UIC8 334 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 HEY1Q9Y5J3 304 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 RARAP10276 462 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 PRKCIP41743 596 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 RABGGTBP53611 331 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 NRLP54845 237 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 SLC29A2Q14542 456 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 KYNUQ16719 465 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 DCAF12L1Q5VU92 463 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 KIAA0319LQ8IZA0 1049 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 HNRNPLLQ8WVV9 542 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 GPR88Q9GZN0 384 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 STAM2O75886 525 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 TTMPQ5BVD1 217 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 METTL7BQ6UX53 244 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 EXOC4Q96A65 974 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 ZSWIM1Q9BR11 485 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 CISHQ9NSE2 258 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 PGAP2Q9UHJ9 254 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 SHBGP04278 402 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 NFICP08651 508 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 RARBP10826 455 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 GCLCP48506 637 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 NCKAP1LP55160 1127 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 SLFN12LQ6IEE8 588 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 ANKMY2Q8IV38 441 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 LRRC57Q8N9N7 239 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 HAPLN2Q9GZV7 340 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 COL11A2P13942 1736 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 TARSL2A2RTX5 802 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 WDR91A4D1P6 747 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 AGPSO00116 658 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 PPP1R37O75864 691 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 HUNKP57058 714 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 IFT88Q13099 833 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 FAXCQ5TGI0 409 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 C12orf29Q8N999 325 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 AENQ8WTP8 325 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 ZNF606Q8WXB4 792 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 RRAGCQ9HB90 399 aa14.61□□□□□ -0.07
CCDC88A-211ENST00000471947 SYNGAP1Q96PV0 1343 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 LY75O60449 1722 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 MAFGO15525 162 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 ATF2P15336 505 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 ACAD10Q6JQN1 1059 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 ADPGKQ9BRR6 497 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 DDX23Q9BUQ8 820 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 PCDHB2Q9Y5E7 798 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 GTPBP10A4D1E9 387 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 OR6J1Q8NGC5 347 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 LMO3Q8TAP4 145 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 EPS8L3Q8TE67 593 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 LRRC4CQ9HCJ2 640 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 PRDM4Q9UKN5 801 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 RPTORQ8N122 1335 aa14.6□□□□□ -0.07
CCDC88A-211ENST00000471947 ADCY3O60266 1144 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 FDX1P10109 184 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 PHKA2P46019 1235 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 FAM102AQ5T9C2 384 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 RFX6Q8HWS3 928 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 FAM71AQ8IYT1 594 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 GPRC5AQ8NFJ5 357 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 PCYT2Q99447 389 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 R3HDM2Q9Y2K5 976 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 TIMM13Q9Y5L4 95 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 BRCA2P51587 3418 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 GOLGA6L7A0A1B0GV03 622 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 HCRTO43612 131 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 PLA2G6O60733 806 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 TAS2R40P59535 323 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 BASP1P80723 227 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 ZNF200P98182 395 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 SNAPC2Q13487 334 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 SEPT7Q16181 437 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 SHC3Q92529 594 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 KLF6Q99612 283 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 SMYD3Q9H7B4 428 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 INPP5FQ9Y2H2 1132 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 UBE4BO95155 1302 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 RREB1Q92766 1687 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 BANF1O75531 89 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 LCA5LO95447 670 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 YY1P25490 414 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 NAMPTP43490 491 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 RPL21P46778 160 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 C1orf228Q6PIY5 440 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 PPP1R21Q6ZMI0 780 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 SLC13A5Q86YT5 568 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 MAK16Q9BXY0 300 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 ALG13Q9NP73 1137 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 RNF14Q9UBS8 474 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 ANAPC5Q9UJX4 755 aa14.59□□□□□ -0.07
CCDC88A-211ENST00000471947 GAS8O95995 478 aa14.58□□□□□ -0.07
CCDC88A-211ENST00000471947 TFDP1Q14186 410 aa14.58□□□□□ -0.07
CCDC88A-211ENST00000471947 NIPA1Q7RTP0 329 aa14.58□□□□□ -0.07
CCDC88A-211ENST00000471947 GOLGA2P5Q9HBQ8 144 aa14.58□□□□□ -0.07
CCDC88A-211ENST00000471947 CTNNAL1Q9UBT7 734 aa14.58□□□□□ -0.07
CCDC88A-211ENST00000471947 PIN4Q9Y237 131 aaKnown RBP14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms