RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ITPKAP23677 461 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 GRIK4Q16099 956 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 TBCELQ5QJ74 424 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 CC2D1BQ5T0F9 858 aaKnown RBP5.86□□□□□ -1.47
HMGB1-207ENST00000468384 C16orf46Q6P387 395 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 TXNDC11Q6PKC3 985 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 NSMFQ6X4W1 530 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 SPATA31D4Q6ZUB0 917 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 USP49Q70CQ1 688 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 LPCAT2Q7L5N7 544 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 TIPARPQ7Z3E1 657 aaKnown RBP5.86□□□□□ -1.47
HMGB1-207ENST00000468384 TMEM173Q86WV6 379 aaPredicted RBP5.86□□□□□ -1.47
HMGB1-207ENST00000468384 PPTC7Q8NI37 304 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 HDAC7Q8WUI4 952 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 TP53INP1Q96A56 240 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 ELSPBP1Q96BH3 223 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 MSANTD3Q96H12 275 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 TMX1Q9H3N1 280 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 ATP6V0A4Q9HBG4 840 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 CYLDQ9NQC7 956 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 SETD4Q9NVD3 440 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 RAI14Q9P0K7 980 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 PADI3Q9ULW8 664 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 PHTF1Q9UMS5 762 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 BIRC6Q9NR09 4857 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.85□□□□□ -1.473e-10■■■□□ 17.4
HMGB1-207ENST00000468384 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 FZD6O60353 706 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 PPFIA4O75335 1185 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 BMP4P12644 408 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 EEF2P13639 858 aaKnown RBP5.85□□□□□ -1.47
HMGB1-207ENST00000468384 GDI1P31150 447 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 EIF1AXP47813 144 aaKnown RBP5.85□□□□□ -1.47
HMGB1-207ENST00000468384 SOX9P48436 509 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 DGKEP52429 567 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 BCAR1P56945 870 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 PAK2Q13177 524 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 DSC3Q14574 896 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 GRM4Q14833 912 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 SKOR2Q2VWA4 1001 aaPredicted RBP5.85□□□□□ -1.47
HMGB1-207ENST00000468384 TKFCQ3LXA3 575 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 ARL13BQ3SXY8 428 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 MUM1L1Q5H9M0 696 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 LYSMD4Q5XG99 296 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 CAPRIN2Q6IMN6 1127 aaKnown RBP5.85□□□□□ -1.47
HMGB1-207ENST00000468384 RHBDD1Q8TEB9 315 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 ZNF578Q96N58 590 aaPredicted RBP5.85□□□□□ -1.47
HMGB1-207ENST00000468384 PLEKHF1Q96S99 279 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 BCL11AQ9H165 835 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 PLEKHA4Q9H4M7 779 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 GSX1Q9H4S2 264 aaPredicted RBP5.85□□□□□ -1.47
HMGB1-207ENST00000468384 CHST12Q9NRB3 414 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 RNF19AQ9NV58 838 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 ANAPC2Q9UJX6 822 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 BRPF3Q9ULD4 1205 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 CDY2AQ9Y6F7 541 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 DOCK6Q96HP0 2047 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 NAV1Q8NEY1 1877 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 WNK1Q9H4A3 2382 aa5.85□□□□□ -1.47
HMGB1-207ENST00000468384 COL1A2P08123 1366 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 MTCL1Q9Y4B5 1905 aaKnown RBP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 MTSS1O43312 755 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 TNFSF14O43557 240 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 MGEA5O60502 916 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 PRKCGP05129 697 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 SSBP05455 408 aaKnown RBP eCLIP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 ADH1AP07327 375 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 ALAS1P13196 640 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 EDNRBP24530 442 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 ERCC5P28715 1186 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 ADAM17P78536 824 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 GABPAQ06546 454 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 LTBQ06643 244 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 PON2Q15165 354 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 COX20Q5RI15 118 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 SLC24A5Q71RS6 500 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 FAM177A1Q8N128 213 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 PNMA5Q96PV4 448 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 C16orf70Q9BSU1 422 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 C2orf49Q9BVC5 232 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 VN1R3Q9BXE9 311 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 TMEM245Q9H330 911 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 C8orf33Q9H7E9 229 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 GEMIN8Q9NWZ8 242 aaKnown RBP5.84□□□□□ -1.47
HMGB1-207ENST00000468384 TMEM161AQ9NX61 479 aa5.84□□□□□ -1.47
HMGB1-207ENST00000468384 LRRK1Q38SD2 2015 aa5.84□□□□□ -1.48
HMGB1-207ENST00000468384 LCTP09848 1927 aa5.84□□□□□ -1.48
HMGB1-207ENST00000468384 MGAM2Q2M2H8 2515 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 ESYT2A0FGR8 921 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 SLC38A8A6NNN8 435 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 C9IYK1 514 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 SCAMP3O14828 347 aaKnown RBP5.83□□□□□ -1.48
HMGB1-207ENST00000468384 GPR182O15218 404 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 TEX28O15482 410 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 MED26O95402 600 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 CYP2E1P05181 493 aaPredicted RBP5.83□□□□□ -1.48
HMGB1-207ENST00000468384 ITGB5P18084 799 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 GNLYP22749 145 aa5.83□□□□□ -1.48
HMGB1-207ENST00000468384 KPNA1P52294 538 aaPredicted RBP5.83□□□□□ -1.48
HMGB1-207ENST00000468384 EHHADHQ08426 723 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms