RNA–Protein interactions for RNA: ENST00000462352.5

CPNE1-221, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-221ENST00000462352 METTL14Q9HCE5 456 aaKnown RBP12.74□□□□□ -0.37
CPNE1-221ENST00000462352 ARMCX3Q9UH62 379 aaPredicted RBP12.74□□□□□ -0.37
CPNE1-221ENST00000462352 PUF60Q9UHX1 559 aaKnown RBP12.74□□□□□ -0.37
CPNE1-221ENST00000462352 ITGA11Q9UKX5 1188 aa12.74□□□□□ -0.37
CPNE1-221ENST00000462352 COL4A4P53420 1690 aaPredicted RBP12.73□□□□□ -0.37
CPNE1-221ENST00000462352 SF3B1O75533 1304 aaKnown RBP eCLIP12.73□□□□□ -0.37
CPNE1-221ENST00000462352 IKBKBO14920 756 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 GNA14O95837 355 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 KRT19P08727 400 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 TRIM49P0CI25 452 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 TRIM49CP0CI26 452 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 POLR2BP30876 1174 aaKnown RBP12.73□□□□□ -0.37
CPNE1-221ENST00000462352 BRCC3P46736 316 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 AP3M2P53677 418 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 MARSP56192 900 aaKnown RBP12.73□□□□□ -0.37
CPNE1-221ENST00000462352 CAMK1Q14012 370 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 SCARA3Q6AZY7 606 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 TAS1R1Q7RTX1 841 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 TRAPPC11Q7Z392 1133 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 RNF168Q8IYW5 571 aaPredicted RBP12.73□□□□□ -0.37
CPNE1-221ENST00000462352 LMAN2LQ9H0V9 348 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 STK39Q9UEW8 545 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 SIX4Q9UIU6 781 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 AGAP1Q9UPQ3 857 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 NUB1Q9Y5A7 615 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 PLXNA4Q9HCM2 1894 aa12.73□□□□□ -0.37
CPNE1-221ENST00000462352 I3L4J1 428 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 SPTLC1O15269 473 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 TRAPPC3O43617 180 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 CSPG5O95196 566 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 CST3P01034 146 aaPredicted RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 C4BPAP04003 597 aaKnown RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 SOD2P04179 222 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 GCLMP48507 274 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 TAF6P49848 677 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 ERVFC1P60507 584 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 RBP5P82980 135 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 MYL5Q02045 173 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 PPP3CAQ08209 521 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 BIRC3Q13489 604 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 ADGRE1Q14246 886 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 ZACNQ401N2 412 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 DCAF17Q5H9S7 520 aaPredicted RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 TCERG1LQ5VWI1 586 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 TDRD10Q5VZ19 366 aaKnown RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 C15orf39Q6ZRI6 1047 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 IRF2BP1Q8IU81 584 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 VPS52Q8N1B4 723 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 SLC35C1Q96A29 364 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 CNOT6LQ96LI5 555 aaKnown RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 GUCD1Q96NT3 240 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 GAS2L1Q99501 681 aaPredicted RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 CDX2Q99626 313 aaPredicted RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 HERC2P3Q9BVR0 1158 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 NAT10Q9H0A0 1025 aaKnown RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 THAP9Q9H5L6 903 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 MMRN2Q9H8L6 949 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 TLR9Q9NR96 1032 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 SAMSN1Q9NSI8 373 aaKnown RBP12.72□□□□□ -0.37
CPNE1-221ENST00000462352 MTMR10Q9NXD2 777 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 NFE2L3Q9Y4A8 694 aa12.72□□□□□ -0.37
CPNE1-221ENST00000462352 TRANK1O15050 2925 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 FSCN2O14926 492 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 STX10O60499 249 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 PHACTR2O75167 634 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 VNN1O95497 513 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 GTF2H1P32780 548 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 IRS1P35568 1242 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 PNPLA4P41247 253 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 AARSP49588 968 aaKnown RBP eCLIP12.71□□□□□ -0.37
CPNE1-221ENST00000462352 LILRA4P59901 499 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 ELAVL2Q12926 359 aaKnown RBP12.71□□□□□ -0.37
CPNE1-221ENST00000462352 PTPROQ16827 1216 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 USP41Q3LFD5 358 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 TIGD5Q53EQ6 642 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 FAM171A1Q5VUB5 890 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 SV2AQ7L0J3 742 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 TMC7Q7Z402 723 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 TRIM59Q8IWR1 403 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 LRRC52Q8N7C0 313 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 MYLIPQ8WY64 445 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 MRPL38Q96DV4 380 aaKnown RBP12.71□□□□□ -0.37
CPNE1-221ENST00000462352 SUSD3Q96L08 255 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 B3GALT6Q96L58 329 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 ZNF560Q96MR9 790 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 TCF25Q9BQ70 676 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 BPIFA3Q9BQP9 254 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 ZBP1Q9H171 429 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 TMEM8AQ9HCN3 771 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 ENTPD7Q9NQZ7 604 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 CHST7Q9NS84 486 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 LMCD1Q9NZU5 365 aa12.71□□□□□ -0.37
CPNE1-221ENST00000462352 R3HCC1Q9Y3T6 440 aaKnown RBP12.71□□□□□ -0.37
CPNE1-221ENST00000462352 MYO9BQ13459 2157 aa12.7□□□□□ -0.38
CPNE1-221ENST00000462352 KPNA7A9QM74 516 aa12.7□□□□□ -0.38
CPNE1-221ENST00000462352 M0QZQ0 153 aa12.7□□□□□ -0.38
CPNE1-221ENST00000462352 CTSAP10619 480 aa12.7□□□□□ -0.38
CPNE1-221ENST00000462352 POU3F3P20264 500 aaPredicted RBP12.7□□□□□ -0.38
CPNE1-221ENST00000462352 FGFR3P22607 806 aa12.7□□□□□ -0.38
CPNE1-221ENST00000462352 IGFBP4P22692 258 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms