RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PPP1R2P3Q6NXS1 205 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 TRIM72Q6ZMU5 477 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 ZBED8Q8IZ13 594 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 FAM167AQ96KS9 214 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 KIAA1683Q9H0B3 1180 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 TMBIM4Q9HC24 238 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 NWD2Q9ULI1 1742 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 MYH14Q7Z406 1995 aaKnown RBP12.34□□□□□ -0.43
NPHP4-204ENST00000460696 VWA5AO00534 786 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 IRF6O14896 467 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 PRPSAP2O60256 369 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 MYBL1P10243 752 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 PTENP60484 403 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 SNCBQ16143 134 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 MYCBPAPQ8TBZ2 947 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 EPS8L3Q8TE67 593 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 TSNARE1Q96NA8 513 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 PITPNM3Q9BZ71 974 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 SEPT10Q9P0V9 454 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 PEX10O60683 326 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 AOC2O75106 756 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 HSPA9P38646 679 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ITGA8P53708 1063 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 CYP24A1Q07973 514 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ITGB3BPQ13352 177 aaPredicted RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 P3H1Q32P28 736 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 PALB2Q86YC2 1186 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 MCUR1Q96AQ8 359 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 HVCN1Q96D96 273 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ZBTB45Q96K62 511 aaPredicted RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 XPO6Q96QU8 1125 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 TMEM106CQ9BVX2 250 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 IGLV3-22A0A075B6J6 115 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 FAM107AO95990 144 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ADRB2P07550 413 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 KRT10P13645 584 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 BRD2P25440 801 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 SLC1A1P43005 524 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 CORO7P57737 925 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 PDIA2Q13087 525 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 VGLL4Q14135 290 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 MYBPC2Q14324 1141 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 RRP1BQ14684 758 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 BMT2Q1RMZ1 405 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 SMTNL2Q2TAL5 461 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 FASTKD5Q7L8L6 764 aaKnown RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ERO1BQ86YB8 467 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 ANKMY2Q8IV38 441 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 CCDC110Q8TBZ0 833 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 LENG9Q96B70 501 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 RPS6KC1Q96S38 1066 aa12.33□□□□□ -0.44
NPHP4-204ENST00000460696 RBM15Q96T37 977 aaKnown RBP eCLIP12.33□□□□□ -0.448e-10■■■■■ 32.2
NPHP4-204ENST00000460696 PRDM5Q9NQX1 630 aaPredicted RBP12.33□□□□□ -0.44
NPHP4-204ENST00000460696 LCA5LO95447 670 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 OATP04181 439 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 TXNP10599 105 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 UGCGQ16739 394 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 AGBL2Q5U5Z8 902 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 FOXR2Q6PJQ5 311 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 EPM2AIP1Q7L775 607 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 ZC3H18Q86VM9 953 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 SIAH1Q8IUQ4 282 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 VPS52Q8N1B4 723 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 NME8Q8N427 588 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 CCHCR1Q8TD31 782 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 EPS8L1Q8TE68 723 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 RILPQ96NA2 401 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 ACTR5Q9H9F9 607 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 C17orf75Q9HAS0 396 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 SLC38A10Q9HBR0 1119 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 ITGB4P16144 1822 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 A6NJR5 290 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 TCP11X1B4DZS4 312 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 M0QYV0 167 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 KRT3P12035 628 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 SNRPFP62306 86 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 CYP4A22Q5TCH4 519 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 RGMBQ6NW40 437 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 RBAK-RBAKDNI3L0D1 243 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 I3L4J1 428 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 NDC80O14777 642 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 CAPN9O14815 690 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 NPM3O75607 178 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 RPSAP08865 295 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 ITIH2P19823 946 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 ZNF844Q08AG5 666 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 ORC1Q13415 861 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 CUL2Q13617 745 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 FAM102AQ5T9C2 384 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 GPAT2Q6NUI2 795 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 TRIM50Q86XT4 487 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 C1orf131Q8NDD1 294 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 OR6B3Q8NGW1 331 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 RSRC1Q96IZ7 334 aaKnown RBP12.32□□□□□ -0.44
NPHP4-204ENST00000460696 SENP7Q9BQF6 1050 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 TRAIPQ9BWF2 469 aa12.32□□□□□ -0.44
NPHP4-204ENST00000460696 MT-ND3P03897 115 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 CETPP11597 493 aa12.31□□□□□ -0.44
NPHP4-204ENST00000460696 KCNA3P22001 575 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms