RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TTC1Q99614 292 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 C10orf88Q9H8K7 445 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 SLC17A7Q9P2U7 560 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 USTQ9Y2C2 406 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 ATP8B3O60423 1300 aa12.42□□□□□ -0.42
CPSF3-202ENST00000460593 MYH14Q7Z406 1995 aaKnown RBP12.42□□□□□ -0.42
CPSF3-202ENST00000460593 MEIS2O14770 477 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 BCRP11274 1271 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 RHBDL3P58872 404 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 NR1H3Q13133 447 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 FAM178BQ8IXR5 827 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 C12orf50Q8NA57 414 aaPredicted RBP12.41□□□□□ -0.42
CPSF3-202ENST00000460593 ERMNQ8TAM6 284 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 WDR66Q8TBY9 1149 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 GATA6Q92908 595 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 STMN2Q93045 179 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 KREMEN1Q96MU8 473 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 CCDC77Q9BR77 488 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 CBWD1Q9BRT8 395 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 WRAP73Q9P2S5 460 aaPredicted RBP12.41□□□□□ -0.42
CPSF3-202ENST00000460593 ARFGEF1Q9Y6D6 1849 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 MAST2Q6P0Q8 1798 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 KCNQ2O43526 872 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 HAUS5O94927 633 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 GAS8O95995 478 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 SMARCA1P28370 1054 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 PPP4CP60510 307 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 CLUL1Q15846 466 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 IZUMO2Q6UXV1 221 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 FAM81AQ8TBF8 368 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 FAM161BQ96MY7 647 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 FIZ1Q96SL8 496 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 BTBD10Q9BSF8 475 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 TMEM117Q9H0C3 514 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 PICK1Q9NRD5 415 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 TAS2R1Q9NYW7 299 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 NOCTQ9UK39 431 aaKnown RBP12.41□□□□□ -0.42
CPSF3-202ENST00000460593 KIF13BQ9NQT8 1826 aa12.41□□□□□ -0.42
CPSF3-202ENST00000460593 A6NJR5 290 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ABLIM1O14639 778 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 PLSCR1O15162 318 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 LYNP07948 512 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 KRT10P13645 584 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 MAPK4P31152 587 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 HOXA7P31268 230 aaPredicted RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 STAT4Q14765 748 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ATP13A4Q4VNC1 1196 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 NBPF5PQ86XG9 351 aaPredicted RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ACSF2Q96CM8 615 aaPredicted RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 LNPEPQ9UIQ6 1025 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF652Q9Y2D9 606 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 PHLPP1O60346 1717 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 hCG_1984214I3L0E3 225 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 MAGEB2O15479 319 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 MAP3K7O43318 606 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 HADHBP55084 474 aaKnown RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ZBED8Q8IZ13 594 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF713Q8N859 430 aaPredicted RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 CPA5Q8WXQ8 436 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 CCDC127Q96BQ5 260 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 PARVGQ9HBI0 331 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 DDX4Q9NQI0 724 aaKnown RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 PKD2L1Q9P0L9 805 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ECE2O60344 883 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 SNHG28P0DPA3 235 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF76P36508 570 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ZFYVE27Q5T4F4 411 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ZNF720Q7Z2F6 126 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ALYREFQ86V81 257 aaKnown RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 SLFN12Q8IYM2 578 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 SEMA4DQ92854 862 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ANKRD2Q9GZV1 360 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 PREBQ9HCU5 417 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 CYLDQ9NQC7 956 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 TOPORSQ9NS56 1045 aaPredicted RBP12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ETNK2Q9NVF9 386 aa12.4□□□□□ -0.42
CPSF3-202ENST00000460593 ROBO1Q9Y6N7 1651 aa12.4□□□□□ -0.43
CPSF3-202ENST00000460593 MAGEA13PA6NCF6 341 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 SORBS3O60504 671 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 CCDC22O60826 627 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 STK10O94804 968 aaKnown RBP12.39□□□□□ -0.43
CPSF3-202ENST00000460593 OR6B1O95007 311 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 GSTO1P78417 241 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 RASA3Q14644 834 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 SAMD1Q6SPF0 538 aaPredicted RBP12.39□□□□□ -0.43
CPSF3-202ENST00000460593 TRIM74Q86UV6 250 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 TRIM73Q86UV7 250 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 PPFIBP2Q8ND30 876 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 PTCD3Q96EY7 689 aaKnown RBP12.39□□□□□ -0.43
CPSF3-202ENST00000460593 ZNF184Q99676 751 aaPredicted RBP12.39□□□□□ -0.43
CPSF3-202ENST00000460593 VAV3Q9UKW4 847 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 NEU2Q9Y3R4 380 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 DDX39AO00148 427 aaKnown RBP12.39□□□□□ -0.43
CPSF3-202ENST00000460593 TCEA3O75764 348 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 MUTP22033 750 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 INHBCP55103 352 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 OCRLQ01968 901 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 AP1B1Q10567 949 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 SLC45A4Q5BKX6 768 aa12.39□□□□□ -0.43
CPSF3-202ENST00000460593 CFAP157Q5JU67 520 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms