RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SCINQ9Y6U3 715 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 MYO1CO00159 1063 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 ECEL1O95672 775 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 CCT5P48643 541 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 IFFO1Q0D2I5 559 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 DRP2Q13474 957 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 LY6KQ17RY6 165 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 KRT71Q3SY84 523 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 DDX27Q96GQ7 796 aaKnown RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 GPR20Q99678 358 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 ACO2Q99798 780 aaKnown RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 TRIM7Q9C029 511 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 ASCC2Q9H1I8 757 aaPredicted RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 FEZ2Q9UHY8 353 aaPredicted RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 LCMT1Q9UIC8 334 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 UMODL1Q5DID0 1318 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 SOCS7O14512 581 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 PSTPIP1O43586 416 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 MAMLD1Q13495 774 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 PTGISQ16647 500 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 SGO2Q562F6 1265 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 CELF3Q5SZQ8 465 aaKnown RBP16.05■□□□□ 0.16
LDLR-202ENST00000455727 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.05■□□□□ 0.16
LDLR-202ENST00000455727 TSPYL1Q9H0U9 437 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 C2orf40Q9H1Z8 148 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 HOMER3Q9NSC5 361 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 WHRNQ9P202 907 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 OGTO15294 1046 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 RARGP13631 454 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 PPP2R2AP63151 447 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 MCL1Q07820 350 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 LAMTOR4Q0VGL1 99 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 MKRN4PQ13434 485 aaPredicted RBP16.05■□□□□ 0.16
LDLR-202ENST00000455727 DENND2CQ68D51 928 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 ZBTB8OSQ8IWT0 167 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 TLCD1Q96CP7 247 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 PGM2Q96G03 612 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 JPH2Q9BR39 696 aaPredicted RBP16.05■□□□□ 0.16
LDLR-202ENST00000455727 TMEM109Q9BVC6 243 aa16.05■□□□□ 0.16
LDLR-202ENST00000455727 DNAJC25-GNG10A0A024R161 153 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 ZBTB42B2RXF5 422 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 NDUFAB1O14561 156 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 CFHP08603 1231 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 HPDP32754 393 aaPredicted RBP16.04■□□□□ 0.16
LDLR-202ENST00000455727 KCNJ1P48048 391 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 SLC26A2P50443 739 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 IRX5P78411 483 aaPredicted RBP16.04■□□□□ 0.16
LDLR-202ENST00000455727 BYSLQ13895 437 aaKnown RBP16.04■□□□□ 0.16
LDLR-202ENST00000455727 MAPK6Q16659 721 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 DLK2Q6UY11 383 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 B4GALNT4Q76KP1 1039 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 RHOT1Q8IXI2 618 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 ZNF606Q8WXB4 792 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 FGD4Q96M96 766 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 C11orf70Q9BRQ4 267 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 TCHPQ9BT92 498 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 PAGR1Q9BTK6 254 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 PARVAQ9NVD7 372 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 BCCIPQ9P287 314 aaKnown RBP eCLIP16.04■□□□□ 0.16
LDLR-202ENST00000455727 NOVA2Q9UNW9 492 aaKnown RBP16.04■□□□□ 0.16
LDLR-202ENST00000455727 AGTPBP1Q9UPW5 1226 aa16.04■□□□□ 0.16
LDLR-202ENST00000455727 LOC102724159A0A0B4J2E5 919 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 TTLL13PA6NNM8 815 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 ADM5C9JUS6 153 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 ABLIM1O14639 778 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 THAP12O43422 761 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 DDNO94850 711 aaPredicted RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 ARIH2O95376 493 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 CST3P01034 146 aaPredicted RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 CORO7P57737 925 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 PWP2Q15269 919 aaKnown RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 PPP1R7Q15435 360 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 DUOXA2Q1HG44 320 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 SGSM1Q2NKQ1 1148 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 ODF2Q5BJF6 829 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 SPATS2Q86XZ4 545 aaKnown RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 KATNAL2Q8IYT4 538 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 ANKRD13AQ8IZ07 590 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 GRK7Q8WTQ7 553 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 RNF25Q96BH1 459 aaPredicted RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 OTUD5Q96G74 571 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 ELP3Q9H9T3 547 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 CPSF3Q9UKF6 684 aaKnown RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 KCNH4Q9UQ05 1017 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 PTPN22Q9Y2R2 807 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 SPDYE5A6NIY4 337 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 NOP56O00567 594 aaKnown RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 LSM8O95777 96 aaKnown RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 PRKCBP05771 671 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 ITIH2P19823 946 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 MMP8P22894 467 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 TNFSF9P41273 254 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 CALCOCO2Q13137 446 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 HSDL1Q3SXM5 330 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 SEZ6Q53EL9 994 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 EEPD1Q7L9B9 569 aa16.03■□□□□ 0.16
LDLR-202ENST00000455727 CNOT10Q9H9A5 744 aaKnown RBP16.03■□□□□ 0.16
LDLR-202ENST00000455727 PAEPP09466 180 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 HARSP12081 509 aaKnown RBP16.02■□□□□ 0.16
LDLR-202ENST00000455727 PROZP22891 400 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms