RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PCDHB8Q9UN66 801 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 DERAQ9Y315 318 aa13.1□□□□□ -0.31
USP40-210ENST00000454354 WDR27A2RRH5 827 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 TISP43B9A030 160 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 H7C4K7 107 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 XYLBO75191 536 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 ABLIM3O94929 683 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 ZSCAN22P10073 491 aaPredicted RBP13.09□□□□□ -0.31
USP40-210ENST00000454354 GBP2P32456 591 aaPredicted RBP13.09□□□□□ -0.31
USP40-210ENST00000454354 SPAG1Q07617 926 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 TDGQ13569 410 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 E2F4Q16254 413 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 L1TD1Q5T7N2 865 aaKnown RBP13.09□□□□□ -0.31
USP40-210ENST00000454354 SPATA1Q5VX52 437 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 ZNF280DQ6N043 979 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 SUGP1Q8IWZ8 645 aaKnown RBP13.09□□□□□ -0.31
USP40-210ENST00000454354 APPL2Q8NEU8 664 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 ZNF461Q8TAF7 563 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 TNMDQ9H2S6 317 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 SMOC2Q9H3U7 446 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 CUEDC2Q9H467 287 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 ASB7Q9H672 318 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 MRPL44Q9H9J2 332 aaKnown RBP13.09□□□□□ -0.31
USP40-210ENST00000454354 FBXL5Q9UKA1 691 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 DUSP12Q9UNI6 340 aa13.09□□□□□ -0.31
USP40-210ENST00000454354 ZFP37Q9Y6Q3 630 aaPredicted RBP13.09□□□□□ -0.31
USP40-210ENST00000454354 MIA3Q5JRA6 1907 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 DENND4CQ5VZ89 1909 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ARHGEF37A1IGU5 675 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 CCL16O15467 120 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 CUTAO60888 179 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 HSP90AA1P07900 732 aaKnown RBP13.08□□□□□ -0.32
USP40-210ENST00000454354 LAMP2P13473 410 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ATF2P15336 505 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 PAX3P23760 479 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ADSSP30520 456 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 CASP5P51878 434 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ALCAMQ13740 583 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ADALQ6DHV7 355 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 JADE1Q6IE81 842 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 GET4Q7L5D6 327 aaPredicted RBP13.08□□□□□ -0.32
USP40-210ENST00000454354 GRASPQ7Z6J2 395 aaPredicted RBP13.08□□□□□ -0.32
USP40-210ENST00000454354 TCEAL8Q8IYN2 117 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 TMEM130Q8N3G9 435 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 PDILTQ8N807 584 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 NXPE3Q969Y0 559 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ACCSQ96QU6 501 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 PANK2Q9BZ23 570 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 IKZF4Q9H2S9 585 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 KBTBD4Q9NVX7 518 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 TFIP11Q9UBB9 837 aaKnown RBP13.08□□□□□ -0.32
USP40-210ENST00000454354 AGO2Q9UKV8 859 aaKnown RBP13.08□□□□□ -0.32
USP40-210ENST00000454354 MAFFQ9ULX9 164 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 EXOC7Q9UPT5 735 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 C2CD2Q9Y426 696 aa13.08□□□□□ -0.32
USP40-210ENST00000454354 ANHXE9PGG2 379 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 OAZ2O95190 189 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 PDGFBP01127 241 aaPredicted RBP13.07□□□□□ -0.32
USP40-210ENST00000454354 NFICP08651 508 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 IDEP14735 1019 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 FSHRP23945 695 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 ACOT2P49753 483 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 GUCY2FP51841 1108 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 KCNA1Q09470 495 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 TMEM132DQ14C87 1099 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 POSTNQ15063 836 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 CTXN3Q4LDR2 81 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 TPGS2Q68CL5 300 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 ATL3Q6DD88 541 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 CNNM4Q6P4Q7 775 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 SHC4Q6S5L8 630 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 CRELD2Q6UXH1 353 aaPredicted RBP13.07□□□□□ -0.32
USP40-210ENST00000454354 BEST2Q8NFU1 509 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 KCNG4Q8TDN1 519 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 OXCT2Q9BYC2 517 aaPredicted RBP13.07□□□□□ -0.32
USP40-210ENST00000454354 FGFBP2Q9BYJ0 223 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 LRRC27Q9C0I9 530 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 AVENQ9NQS1 362 aaPredicted RBP13.07□□□□□ -0.32
USP40-210ENST00000454354 PANK4Q9NVE7 773 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 PCDHB13Q9Y5F0 798 aa13.07□□□□□ -0.32
USP40-210ENST00000454354 NUP210Q8TEM1 1887 aaPredicted RBP13.07□□□□□ -0.32
USP40-210ENST00000454354 ANO9A1A5B4 782 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 PIRO00625 290 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 PPEF2O14830 753 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 IL18RAPO95256 599 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 GCNT3O95395 438 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 TYMPP19971 482 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 GARTP22102 1010 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 VCPP55072 806 aaKnown RBP13.06□□□□□ -0.32
USP40-210ENST00000454354 LILRA4P59901 499 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 NTHL1P78549 312 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 HTR4Q13639 388 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 PKP1Q13835 747 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 C9orf57Q5W0N0 161 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 NT5DC4Q86YG4 428 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 CCDC65Q8IXS2 484 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 POMGNT1Q8WZA1 660 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 PRRX2Q99811 253 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 TRIM9Q9C026 710 aa13.06□□□□□ -0.32
USP40-210ENST00000454354 MAGEF1Q9HAY2 307 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms