RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 LCHNA4D1U4 455 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 LINC01553A4QN01 128 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 ZC3H11AO75152 810 aaKnown RBP eCLIP12.49□□□□□ -0.41
SCN9A-204ENST00000452182 ITGB3P05106 788 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 GALTP07902 379 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 ALDH7A1P49419 539 aaKnown RBP12.49□□□□□ -0.41
SCN9A-204ENST00000452182 BCAR1P56945 870 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 RBP5P82980 135 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 VWA3BQ502W6 1294 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 C9orf57Q5W0N0 161 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 DCLRE1AQ6PJP8 1040 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 LRRC52Q8N7C0 313 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 RNF214Q8ND24 703 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 NDST4Q9H3R1 872 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 GOLGA2P5Q9HBQ8 144 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 HCSTQ9UBK5 93 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 SIX4Q9UIU6 781 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 MSRAQ9UJ68 235 aa12.49□□□□□ -0.41
SCN9A-204ENST00000452182 GTPBP10A4D1E9 387 aaKnown RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CASTOR2A6NHX0 329 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 TULP1O00294 542 aaPredicted RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PODXLO00592 558 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 NRP1O14786 923 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 STAU1O95793 577 aaKnown RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CA3P07451 260 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 TPM2P07951 284 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 ATICP31939 592 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PPM1AP35813 382 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PNPLA4P41247 253 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 SLC11A1P49279 550 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 GUCY2FP51841 1108 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CETN1Q12798 172 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 BIRC3Q13489 604 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CBWD6Q4V339 395 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CBWD3Q5JTY5 395 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CBWD5Q5RIA9 395 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 KCNT2Q6UVM3 1135 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 FBXL13Q8NEE6 735 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 FAM84AQ96KN4 292 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 ZNF560Q96MR9 790 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 ZNF558Q96NG5 402 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 SAMD11Q96NU1 681 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PAAF1Q9BRP4 392 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 COLEC11Q9BWP8 271 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 RBSNQ9H1K0 784 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 VRTNQ9H8Y1 702 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 FAN1Q9Y2M0 1017 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 YBX2Q9Y2T7 364 aaKnown RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 C5orf67F2Z3F1 127 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PHACTR2O75167 634 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 VNN1O95497 513 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 CST3P01034 146 aaPredicted RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 MYOGP15173 224 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 BMPR1AP36894 532 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PBX2P40425 430 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 OR1G1P47890 313 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 AARSP49588 968 aaKnown RBP eCLIP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 COPB1P53618 953 aaKnown RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 MYL7Q01449 175 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 NCOA4Q13772 614 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 SPOUT1Q5T280 376 aaKnown RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 SLC39A11Q8N1S5 342 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 COLGALT1Q8NBJ5 622 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 TAS1R2Q8TE23 839 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 TAF4BQ92750 862 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PLVAPQ9BX97 442 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 TAB2Q9NYJ8 693 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 STK39Q9UEW8 545 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 AGAP1Q9UPQ3 857 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 R3HCC1Q9Y3T6 440 aaKnown RBP12.48□□□□□ -0.41
SCN9A-204ENST00000452182 PCDHB12Q9Y5F1 795 aa12.48□□□□□ -0.41
SCN9A-204ENST00000452182 SCN1AP35498 2009 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 B3GAT3O94766 335 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 KIF4AO95239 1232 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 EFEMP2O95967 443 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 RB1P06400 928 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 KRT19P08727 400 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 DNAJB2P25686 324 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 POLR2BP30876 1174 aaKnown RBP12.47□□□□□ -0.41
SCN9A-204ENST00000452182 LILRA4P59901 499 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 ERVK-21P61565 698 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 TAP1Q03518 808 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 MYO1EQ12965 1108 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 TRPC3Q13507 836 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 SGSM1Q2NKQ1 1148 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 EPC2Q52LR7 807 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 CD300LGQ6UXG3 332 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 C3orf58Q8NDZ4 430 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 IGSF21Q96ID5 467 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 FAXDC2Q96IV6 333 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 TGS1Q96RS0 853 aaKnown RBP12.47□□□□□ -0.41
SCN9A-204ENST00000452182 XYLT2Q9H1B5 865 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 VPS16Q9H269 839 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 MMRN2Q9H8L6 949 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 MARCH5Q9NX47 278 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 RAB20Q9NX57 234 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 SPG21Q9NZD8 308 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 CACNG4Q9UBN1 327 aa12.47□□□□□ -0.41
SCN9A-204ENST00000452182 CHD9Q3L8U1 2897 aa12.46□□□□□ -0.41
SCN9A-204ENST00000452182 A0A1B0GTH6 734 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms