RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 CPSF3Q9UKF6 684 aaKnown RBP16.85■□□□□ 0.29
LIMS1-210ENST00000449684 MYH15Q9Y2K3 1946 aa16.85■□□□□ 0.29
LIMS1-210ENST00000449684 TISP43B9A030 160 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 CCL16O15467 120 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 LRPAP1P30533 357 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 PKP1Q13835 747 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 JADE1Q6IE81 842 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 ZNF280DQ6N043 979 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 GET4Q7L5D6 327 aaPredicted RBP16.84■□□□□ 0.29
LIMS1-210ENST00000449684 GRASPQ7Z6J2 395 aaPredicted RBP16.84■□□□□ 0.29
LIMS1-210ENST00000449684 NOC3LQ8WTT2 800 aaKnown RBP16.84■□□□□ 0.29
LIMS1-210ENST00000449684 ASB7Q9H672 318 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 TMEM206Q9H813 350 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.84■□□□□ 0.29
LIMS1-210ENST00000449684 PCDHB8Q9UN66 801 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 VWA8A3KMH1 1905 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 C2orf16Q68DN1 1984 aa16.84■□□□□ 0.29
LIMS1-210ENST00000449684 PRRG1O14668 218 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 POLR2DO15514 142 aaKnown RBP16.83■□□□□ 0.28
LIMS1-210ENST00000449684 FAM189A1O60320 539 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 LDHAP00338 332 aaKnown RBP16.83■□□□□ 0.28
LIMS1-210ENST00000449684 LRG1P02750 347 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 FSHRP23945 695 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 HOXA9P31269 272 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 GUCY2FP51841 1108 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 ASIC1P78348 528 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 ROR1Q01973 937 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 YWHAHQ04917 246 aaPredicted RBP16.83■□□□□ 0.28
LIMS1-210ENST00000449684 DNM1Q05193 864 aaKnown RBP16.83■□□□□ 0.28
LIMS1-210ENST00000449684 ZBTB6Q15916 424 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 SHC4Q6S5L8 630 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 RSPO2Q6UXX9 243 aaPredicted RBP16.83■□□□□ 0.28
LIMS1-210ENST00000449684 RTL10Q7L3V2 364 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 ZNF461Q8TAF7 563 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 MYO10Q9HD67 2058 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 PCDHA7Q9UN72 937 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 DERAQ9Y315 318 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 STYXL1Q9Y6J8 313 aa16.83■□□□□ 0.28
LIMS1-210ENST00000449684 ARHGEF37A1IGU5 675 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 PPP1R37O75864 691 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 NFICP08651 508 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 CPB1P15086 417 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 KCNA1Q09470 495 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 SPATA1Q5VX52 437 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 SLC8B1Q6J4K2 584 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 BMP8AQ7Z5Y6 402 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 PYM1Q9BRP8 204 aaKnown RBP16.82■□□□□ 0.28
LIMS1-210ENST00000449684 FAM213AQ9BRX8 229 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 IKZF4Q9H2S9 585 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 MAGEF1Q9HAY2 307 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 KCNK12Q9HB15 430 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 CYP4F11Q9HBI6 524 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 KBTBD4Q9NVX7 518 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 IGSF9Q9P2J2 1179 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 FBXL5Q9UKA1 691 aa16.82■□□□□ 0.28
LIMS1-210ENST00000449684 PDCD11Q14690 1871 aaKnown RBP16.82■□□□□ 0.28
LIMS1-210ENST00000449684 TRIOO75962 3097 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-210ENST00000449684 FRMD3A2A2Y4 597 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 PRPF6O94906 941 aaKnown RBP16.81■□□□□ 0.28
LIMS1-210ENST00000449684 IL18RAPO95256 599 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 ADRB2P07550 413 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 ODC1P11926 461 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 GARTP22102 1010 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 PAX3P23760 479 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 CASP5P51878 434 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 POU5F1Q01860 360 aaKnown RBP16.81■□□□□ 0.28
LIMS1-210ENST00000449684 TDGQ13569 410 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 MRPL58Q14197 206 aaKnown RBP16.81■□□□□ 0.28
LIMS1-210ENST00000449684 E2F4Q16254 413 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 TPGS2Q68CL5 300 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 CEP57L1Q8IYX8 460 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 ELMOD1Q8N336 334 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 FAM122AQ96E09 287 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 SAAL1Q96ER3 474 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 MYADMQ96S97 322 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 STRA6Q9BX79 667 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 OXCT2Q9BYC2 517 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-210ENST00000449684 TRIM9Q9C026 710 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 MFSD1Q9H3U5 465 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 C2CD2Q9Y426 696 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 TIMM13Q9Y5L4 95 aaPredicted RBP16.81■□□□□ 0.28
LIMS1-210ENST00000449684 DENND4AQ7Z401 1863 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 TECTAO75443 2155 aa16.81■□□□□ 0.28
LIMS1-210ENST00000449684 WDR27A2RRH5 827 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 M0QZQ0 153 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 N4BP1O75113 896 aaKnown RBP16.8■□□□□ 0.28
LIMS1-210ENST00000449684 PAPLNO95428 1278 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 ATF2P15336 505 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 ADSSP30520 456 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 NTHL1P78549 312 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 C9orf57Q5W0N0 161 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 ARMCX5Q6P1M9 558 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 TMEM130Q8N3G9 435 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 FBXL6Q8N531 539 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 NXPE3Q969Y0 559 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 PCIF1Q9H4Z3 704 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 DPP3Q9NY33 737 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 EPS15L1Q9UBC2 864 aa16.8■□□□□ 0.28
LIMS1-210ENST00000449684 FBXL21Q9UKT6 434 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms