RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PPP2R3AQ06190 1150 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 MCL1Q07820 350 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 MAPK7Q13164 816 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 PLD1Q13393 1074 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 MRPL58Q14197 206 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 IL17AQ16552 155 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 CTXN3Q4LDR2 81 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 CWF19L1Q69YN2 538 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 SLFN12LQ6IEE8 588 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 ZNF280DQ6N043 979 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 HAUS6Q7Z4H7 955 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 USP37Q86T82 979 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 MYCT1Q8N699 235 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 GPR152Q8TDT2 470 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 E2F7Q96AV8 911 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 ELSPBP1Q96BH3 223 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 PHOX2BQ99453 314 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 BCO2Q9BYV7 579 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 TBC1D17Q9HA65 648 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 PARVGQ9HBI0 331 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 CYP4F11Q9HBI6 524 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 POLD4Q9HCU8 107 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 FAM86C1Q9NVL1 165 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 ANKFY1Q9P2R3 1169 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 CACNG4Q9UBN1 327 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 CA14Q9ULX7 337 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 UBQLN1Q9UMX0 589 aaKnown RBP7.71□□□□□ -1.18
VPS41-208ENST00000448833 USP20Q9Y2K6 914 aa7.71□□□□□ -1.18
VPS41-208ENST00000448833 ZFHX2Q9C0A1 2572 aaPredicted RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 WDR87Q6ZQQ6 2873 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 KANSL1LA0AUZ9 987 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TTC26A0AVF1 554 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 KRBA1A5PL33 1030 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PRR23AA6NEV1 266 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 OR6C75A6NL08 312 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 MAN2B1O00754 1011 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ABLIM1O14639 778 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 HNRNPDLO14979 420 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 OGTO15294 1046 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PI15O43692 258 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TRAK2O60296 914 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TBC1D4O60343 1298 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TBCAO75347 108 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 FAM13AO94988 1023 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 OAZ2O95190 189 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 FGF19O95750 216 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 RHOP08100 348 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 HARSP12081 509 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 LRPAP1P30533 357 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 DDIT3P35638 169 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TXLNAP40222 546 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 NCKAP1LP55160 1127 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 GPC5P78333 572 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ROR1Q01973 937 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 RAD51AP2Q09MP3 1159 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PPP2R5DQ14738 602 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 POSTNQ15063 836 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 SLC10A6Q3KNW5 377 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ZNF528Q3MIS6 628 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TMEM119Q4V9L6 283 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 SLC44A4Q53GD3 710 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ZBTB41Q5SVQ8 909 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 LCE2DQ5TA82 110 aaPredicted RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 ARMCX5Q6P1M9 558 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 C1orf228Q6PIY5 440 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PARM1Q6UWI2 310 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 CD300LGQ6UXG3 332 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PDZD4Q76G19 769 aaPredicted RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 TAS1R3Q7RTX0 852 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 C1orf210Q8IVY1 113 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 CEP120Q8N960 986 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 KRI1Q8N9T8 703 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 BEST2Q8NFU1 509 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PJA1Q8NG27 643 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 DDX12PQ92771 950 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 FGF14Q92915 247 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 IRF7Q92985 503 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ZMAT2Q96NC0 199 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 TBC1D32Q96NH3 1257 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 PNMA5Q96PV4 448 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 CXCL16Q9H2A7 254 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 RPF1Q9H9Y2 349 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 GOLGA2P5Q9HBQ8 144 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ZFP14Q9HCL3 533 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 DNMT3BQ9UBC3 853 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 HSFX1Q9UBD0 423 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 CCDC39Q9UFE4 941 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 AFF4Q9UHB7 1163 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 FBXL5Q9UKA1 691 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 DSEQ9UL01 958 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 TBX20Q9UMR3 447 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 DERAQ9Y315 318 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ASB3Q9Y575 518 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ANK1P16157 1881 aa7.7□□□□□ -1.18
VPS41-208ENST00000448833 ZNF638Q14966 1978 aaKnown RBP7.7□□□□□ -1.18
VPS41-208ENST00000448833 FRYLO94915 3013 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 WDR27A2RRH5 827 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 I3L4J1 428 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 M0QZQ0 153 aa7.69□□□□□ -1.18
VPS41-208ENST00000448833 ADAM12O43184 909 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms