RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 HPF1Q9NWY4 346 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 CPSF2Q9P2I0 782 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 XPO7Q9UIA9 1087 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 DNMT3LQ9UJW3 386 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 MTF2Q9Y483 593 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 SOS2Q07890 1332 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 A0A1W2PQ27 194 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 A0A1W2PQ64 194 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 A0A1W2PQC6 194 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 A0A1W2PQD8 194 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 CCDC69A6NI79 296 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PTP4A3O75365 173 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 FPR2P25090 351 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ADH6P28332 368 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 NTF4P34130 210 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GJA4P35212 333 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 MLH1P40692 756 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 EIF2DP41214 584 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 KCNC1P48547 511 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 RBM5P52756 815 aaKnown RBP eCLIP2.56□□□□□ -2
CCDC88A-208ENST00000444458 BCAT1P54687 386 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SH3BGRP55822 239 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 NRG3P56975 720 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PCBP3P57721 371 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 AP2B1P63010 937 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 AKAP17AQ02040 695 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 CHRNDQ07001 517 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 KIAA2012Q0VF49 1180 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 RAB32Q13637 225 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 UBXN11Q5T124 520 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 FSTL4Q6MZW2 842 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TTC30AQ86WT1 665 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TTC39CQ8N584 583 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ZCWPW1Q9H0M4 648 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GREM2Q9H772 168 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PFDN4Q9NQP4 134 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 COQ3Q9NZJ6 369 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 HOOK1Q9UJC3 728 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 SH3BP1Q9Y3L3 701 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ZFP37Q9Y6Q3 630 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 NEURL1BA8MQ27 555 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 H7BY64 318 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TSPAN4O14817 238 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 AXIN1O15169 862 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GAS2O43903 313 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 CLASP2O75122 1294 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 STAM2O75886 525 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PAPLNO95428 1278 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GUCA1CO95843 209 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SPARCP09486 303 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ADH5P11766 374 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TNNT1P13805 278 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 HNRNPLP14866 589 aaKnown RBP eCLIP2.56□□□□□ -2
CCDC88A-208ENST00000444458 NPR1P16066 1061 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SP100P23497 879 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 DPP6P42658 865 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 FNTBP49356 437 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 AMPHP49418 695 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 HSD17B7P56937 341 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ROM1Q03395 351 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TBCEQ15813 527 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 ADRM1Q16186 407 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 MMEL1Q495T6 779 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ARL6IP4Q66PJ3 421 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 MCTP2Q6DN12 878 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 RAB12Q6IQ22 244 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SIAH1Q8IUQ4 282 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 KIAA2013Q8IYS2 634 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GOLGA6L1Q8N7Z2 621 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GDAP1Q8TB36 358 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 OTUD7AQ8TE49 926 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 DCAF11Q8TEB1 546 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SMCR8Q8TEV9 937 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 TSPEARQ8WU66 669 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 RUNDC3BQ96NL0 473 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PPP1R9BQ96SB3 815 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 P2RX7Q99572 595 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 EPB41L4AQ9HCS5 686 aaPredicted RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 ARHGEF3Q9NR81 526 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 AP5S1Q9NUS5 200 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PKD2L1Q9P0L9 805 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SH3BGRL2Q9UJC5 107 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 FBXL7Q9UJT9 491 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SCAF8Q9UPN6 1271 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 IQCJ-SCHIP1C9J366 451 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 CHL1O00533 1208 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 IPO8O15397 1037 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 SART1O43290 800 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 AKR1B10O60218 316 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 DRD2P14416 443 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 HLA-DPA1P20036 260 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 SAT1P21673 171 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 EEF1DP29692 281 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 ARFIP2P53365 341 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ALDH18A1P54886 795 aaKnown RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 NLRP5P59047 1200 aa2.55□□□□□ -2
CCDC88A-208ENST00000444458 ZNF200P98182 395 aaPredicted RBP2.55□□□□□ -2
CCDC88A-208ENST00000444458 STK4Q13043 487 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms