RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NKD2Q969F2 451 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-208ENST00000437607 HPS3Q969F9 1004 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 CCDC51Q96ER9 411 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 APOL6Q9BWW8 343 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 CACNG4Q9UBN1 327 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 FBXL21Q9UKT6 434 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 SSX2IPQ9Y2D8 614 aa13.24□□□□□ -0.29
PTPRF-208ENST00000437607 BICDL2A1A5D9 508 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 GOLGA6L3A6NEY3 463 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 LRRIQ4A6NIV6 560 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 CCDC169A6NNP5 214 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 SFI1A8K8P3 1242 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 EIF3DO15371 548 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRF-208ENST00000437607 TGM5O43548 720 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 MAPTP10636 758 aaKnown RBP13.23□□□□□ -0.29
PTPRF-208ENST00000437607 RPL17P18621 184 aaKnown RBP13.23□□□□□ -0.29
PTPRF-208ENST00000437607 GLRA2P23416 452 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 AKAP5P24588 427 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 ABCD1P33897 745 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 PEX3P56589 373 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 TPM4P67936 248 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 STK4Q13043 487 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 MXD4Q14582 209 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-208ENST00000437607 FUT10Q6P4F1 479 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 CYP26C1Q6V0L0 522 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 PALB2Q86YC2 1186 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 GUF1Q8N442 669 aaKnown RBP13.23□□□□□ -0.29
PTPRF-208ENST00000437607 SLC44A3Q8N4M1 653 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 RNF214Q8ND24 703 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 DEPTORQ8TB45 409 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 HDAC7Q8WUI4 952 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 NELFBQ8WX92 580 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 SMG7Q92540 1137 aaKnown RBP13.23□□□□□ -0.29
PTPRF-208ENST00000437607 RABGGTAQ92696 567 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 BPIFA3Q9BQP9 254 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 RTP3Q9BQQ7 232 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 PAAF1Q9BRP4 392 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 KMT5AQ9NQR1 393 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 WNT16Q9UBV4 365 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 KCNG1Q9UIX4 513 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 GIT1Q9Y2X7 761 aa13.23□□□□□ -0.29
PTPRF-208ENST00000437607 GOLGA6L19H0YKK7 550 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 ERCC5P28715 1186 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-208ENST00000437607 PRCPP42785 496 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 NAMPTP43490 491 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 MYL5Q02045 173 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 TFDP1Q14186 410 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 GSE1Q14687 1217 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 TPD52L1Q16890 204 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-208ENST00000437607 GLYCTKQ8IVS8 523 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 ZBTB8OSQ8IWT0 167 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 ADSSL1Q8N142 457 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 SPIRE2Q8WWL2 714 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 BSNDQ8WZ55 320 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 HVCN1Q96D96 273 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 TSG101Q99816 390 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 COLEC11Q9BWP8 271 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 NFKBIZQ9BYH8 718 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 CXCL16Q9H2A7 254 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 CBX8Q9HC52 389 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 POLD4Q9HCU8 107 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 KLK14Q9P0G3 267 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 FNIP2Q9P278 1114 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 ADAM28Q9UKQ2 775 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 CA14Q9ULX7 337 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 MAPK8IP1Q9UQF2 711 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 ANK1P16157 1881 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 CEP250Q9BV73 2442 aa13.22□□□□□ -0.29
PTPRF-208ENST00000437607 PHLPP2Q6ZVD8 1323 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 A0A1B0GUA9 196 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 SMTNL1A8MU46 457 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 SLC16A4O15374 487 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 NPTXRO95502 500 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 C1RP00736 705 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 SRFP11831 508 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 CD44P16070 742 aaKnown RBP13.21□□□□□ -0.29
PTPRF-208ENST00000437607 SCP2P22307 547 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 NMT1P30419 496 aaKnown RBP13.21□□□□□ -0.29
PTPRF-208ENST00000437607 NPTX2P47972 431 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 NCKAP1LP55160 1127 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 USP41Q3LFD5 358 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 SLC27A1Q6PCB7 646 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 GAS2L3Q86XJ1 694 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 NELFCDQ8IXH7 590 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 GLIS3Q8NEA6 775 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 ST13P5Q8NFI4 369 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-208ENST00000437607 RIN2Q8WYP3 895 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-208ENST00000437607 DHTKD1Q96HY7 919 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-208ENST00000437607 KIFC3Q9BVG8 833 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 FGFBP2Q9BYJ0 223 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 PRKD2Q9BZL6 878 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 PLEKHA4Q9H4M7 779 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 DPP7Q9UHL4 492 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 RWDD2AQ9UIY3 292 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 PCDHB13Q9Y5F0 798 aa13.21□□□□□ -0.29
PTPRF-208ENST00000437607 ZMYM2Q9UBW7 1377 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 COL4A2P08572 1712 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 TTLL13PA6NNM8 815 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 PPP1R3GB7ZBB8 358 aa13.2□□□□□ -0.3
PTPRF-208ENST00000437607 ANHXE9PGG2 379 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms