RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 ZC3H7BQ9UGR2 993 aaKnown RBP13.43□□□□□ -0.26
LDB3-205ENST00000429277 FAM32AQ9Y421 112 aaKnown RBP13.43□□□□□ -0.26
LDB3-205ENST00000429277 IGSF9BQ9UPX0 1349 aa13.43□□□□□ -0.26
LDB3-205ENST00000429277 PXDNLA1KZ92 1463 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 HBP1O60381 514 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 NDUFB10O96000 172 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 UCHL3P15374 230 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 DPYDQ12882 1025 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 MAPRE1Q15691 268 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 AGBL2Q5U5Z8 902 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 C16orf89Q6UX73 402 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 AGGF1Q8N302 714 aaeCLIP13.42□□□□□ -0.26
LDB3-205ENST00000429277 PDLIM2Q96JY6 352 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 RPLP2P05387 115 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 RPS12P25398 132 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 METTL16Q86W50 562 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 RNF135Q8IUD6 432 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 SAMD3Q8N6K7 520 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 AMACRQ9UHK6 382 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 KIF28PB7ZC32 967 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 EEF2KO00418 725 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 FAM107AO95990 144 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 TMEM253P0C7T8 217 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 NEK2P51955 445 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 STX3Q13277 289 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 PTK6Q13882 451 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 ZNF555Q8NEP9 628 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 PTPRN2Q92932 1015 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 GJD4Q96KN9 370 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 MRPL1Q9BYD6 325 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 ESYT3A0FGR9 886 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 PGM1P36871 562 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 BAATQ14032 418 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 TAF1CQ15572 869 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 GLB1LQ6UWU2 654 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 RASGRP2Q7LDG7 609 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 TNIP2Q8NFZ5 429 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 SLC35G2Q8TBE7 412 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 USP13Q92995 863 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 RBM15Q96T37 977 aaKnown RBP eCLIP13.42□□□□□ -0.26
LDB3-205ENST00000429277 PPP1R37O75864 691 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 MYCP01106 439 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 GALCP54803 685 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 SESN2P58004 480 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 MRPS25P82663 173 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 ZNF200P98182 395 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 EIF2B5Q13144 721 aaKnown RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 ARHGEF7Q14155 803 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 AASDHQ4L235 1098 aaPredicted RBP13.42□□□□□ -0.26
LDB3-205ENST00000429277 PARP9Q8IXQ6 854 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 SPATA16Q9BXB7 569 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 ZFYVE28Q9HCC9 887 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 HDAC6Q9UBN7 1215 aa13.42□□□□□ -0.26
LDB3-205ENST00000429277 ITGA4P13612 1032 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 MMP14P50281 582 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 PKN3Q6P5Z2 889 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 ATG9AQ7Z3C6 839 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 REEP2Q9BRK0 252 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 MOV10L1Q9BXT6 1211 aaKnown RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 CROCC2H7BZ55 1655 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 HSPA1AP0DMV8 641 aaKnown RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 HSPA1BP0DMV9 641 aaKnown RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 NLRP11P59045 1033 aaKnown RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 ACBD5Q5T8D3 534 aaPredicted RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 SEPT8Q92599 483 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 TMEM106CQ9BVX2 250 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 RIC8BQ9NVN3 520 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 IQGAP3Q86VI3 1631 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 SPDYE5A6NIY4 337 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 EXTL3O43909 919 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 POLBP06746 335 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 HLA-DPA1P20036 260 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 SPDYE7PQ495Y7 208 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 NAPEPLDQ6IQ20 393 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 ERAP1Q9NZ08 941 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 RGL1Q9NZL6 768 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 CCDC78A2IDD5 438 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 ZSCAN9O15535 394 aaPredicted RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 ATXN8OSP0DMR3 200 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 SLC2A3P11169 496 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 FXR2P51116 673 aaKnown RBP eCLIP13.41□□□□□ -0.26
LDB3-205ENST00000429277 RAP1GDS1P52306 607 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 VCPP55072 806 aaKnown RBP13.41□□□□□ -0.26
LDB3-205ENST00000429277 CCDC144BQ3MJ40 725 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 LINC00523Q86TU6 105 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 NIF3L1Q9GZT8 377 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 CYP4F11Q9HBI6 524 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 RAB6BQ9NRW1 208 aa13.41□□□□□ -0.26
LDB3-205ENST00000429277 APRTP07741 180 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 RPA1P27694 616 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 USP10Q14694 798 aaKnown RBP13.4□□□□□ -0.26
LDB3-205ENST00000429277 RABGAP1LQ5R372 815 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 MICALL2Q8IY33 904 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 MXRA8Q9BRK3 442 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 SNAP23O00161 211 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 MDH1P40925 334 aaKnown RBP13.4□□□□□ -0.26
LDB3-205ENST00000429277 CD302Q8IX05 232 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 VPS37AQ8NEZ2 397 aa13.4□□□□□ -0.26
LDB3-205ENST00000429277 ZNF556Q9HAH1 456 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms