RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 KANSL3Q9P2N6 904 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 EMSYQ7Z589 1322 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 WNT7AO00755 349 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 WEE1P30291 646 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 CYP2C18P33260 490 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 TAF6P49848 677 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 GUCY1A3Q02108 690 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 LAMTOR4Q0VGL1 99 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 TIPINQ9BVW5 301 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 HSPBP1Q9NZL4 362 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 RNF14Q9UBS8 474 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-204ENST00000427724 IGF2BP3O00425 579 aaKnown RBP eCLIP11.28□□□□□ -0.6
TCOF1-204ENST00000427724 RGS16O15492 202 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-204ENST00000427724 PRPSAP2O60256 369 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 ST8SIA6P61647 398 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 APBA1Q02410 837 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 LLGL2Q6P1M3 1020 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 RSAD2Q8WXG1 361 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 SCLYQ96I15 445 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 HSD3B7Q9H2F3 369 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 DYRK4Q9NR20 520 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 TJP2Q9UDY2 1190 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 SPTLC1O15269 473 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 KRT10P13645 584 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 FERP16591 822 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 AVPR1AP37288 418 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 IFNAR2P48551 515 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 DHX9Q08211 1270 aaKnown RBP11.28□□□□□ -0.6
TCOF1-204ENST00000427724 TMEM139Q8IV31 216 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 CNPY4Q8N129 248 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 TTC25Q96NG3 672 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 GMLQ99445 158 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 RSAD1Q9HA92 442 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 IRAK4Q9NWZ3 460 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 SNTG2Q9NY99 539 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 CEP72Q9P209 647 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 TARSL2A2RTX5 802 aaKnown RBP11.28□□□□□ -0.6
TCOF1-204ENST00000427724 NT5C1B-RDH14C9J2C7 533 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 FAM86B1E9PN63 330 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 FAM86B2P0C5J1 330 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 EIF4BP23588 611 aaKnown RBP11.28□□□□□ -0.6
TCOF1-204ENST00000427724 GBP1P32455 592 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 RGS7P49802 495 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 HSDL1Q3SXM5 330 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 SV2CQ496J9 727 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 SDE2Q6IQ49 451 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 TRAPPC11Q7Z392 1133 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 LMNTD2Q8IXW0 634 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 KIRREL3Q8IZU9 778 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 IL31RAQ8NI17 732 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 ZNF558Q96NG5 402 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 IFT122Q9HBG6 1241 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 DNAJC12Q9UKB3 198 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 PLAAQ9Y263 795 aa11.28□□□□□ -0.6
TCOF1-204ENST00000427724 CYTH3O43739 400 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 ATP2A2P16615 1042 aaKnown RBP11.27□□□□□ -0.6
TCOF1-204ENST00000427724 PLTPP55058 493 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 DYNLT1P63172 113 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 ELAVL2Q12926 359 aaKnown RBP11.27□□□□□ -0.6
TCOF1-204ENST00000427724 NCOA4Q13772 614 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 SGO2Q562F6 1265 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 FBXL13Q8NEE6 735 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 GABPB2Q8TAK5 448 aaPredicted RBP11.27□□□□□ -0.6
TCOF1-204ENST00000427724 PGLYRP2Q96PD5 576 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 MRPL9Q9BYD2 267 aaKnown RBP11.27□□□□□ -0.6
TCOF1-204ENST00000427724 NAGPAQ9UK23 515 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 GABRQQ9UN88 632 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 NOVA2Q9UNW9 492 aaKnown RBP11.27□□□□□ -0.6
TCOF1-204ENST00000427724 BZW2Q9Y6E2 419 aaKnown RBP11.27□□□□□ -0.6
TCOF1-204ENST00000427724 CAPN6Q9Y6Q1 641 aa11.27□□□□□ -0.6
TCOF1-204ENST00000427724 PRR23AA6NEV1 266 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 MEFVO15553 781 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-204ENST00000427724 GEN1Q17RS7 908 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 DCAF4L1Q3SXM0 396 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 PDXDC1Q6P996 788 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 STKLD1Q8NE28 680 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 EMILIN2Q9BXX0 1053 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 DDX47Q9H0S4 455 aaKnown RBP11.27□□□□□ -0.61
TCOF1-204ENST00000427724 ITGB3P05106 788 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 FAM133BQ5BKY9 247 aaKnown RBP11.27□□□□□ -0.61
TCOF1-204ENST00000427724 TTI2Q6NXR4 508 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 TBC1D1Q86TI0 1168 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-204ENST00000427724 ANKRD42Q8N9B4 389 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 SPDL1Q96EA4 605 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 RBM12Q9NTZ6 932 aaKnown RBP11.27□□□□□ -0.61
TCOF1-204ENST00000427724 ADAM22Q9P0K1 906 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 STAP1Q9ULZ2 295 aa11.27□□□□□ -0.61
TCOF1-204ENST00000427724 H7C4K7 107 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 MED24O75448 989 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 KRT14P02533 472 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 HOXA7P31268 230 aaPredicted RBP11.26□□□□□ -0.61
TCOF1-204ENST00000427724 SNRNP35Q16560 246 aaKnown RBP11.26□□□□□ -0.61
TCOF1-204ENST00000427724 RFX6Q8HWS3 928 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 MAGOHBQ96A72 148 aaKnown RBP11.26□□□□□ -0.61
TCOF1-204ENST00000427724 HPDLQ96IR7 371 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 C7orf25Q9BPX7 421 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 ARHGAP39Q9C0H5 1083 aa11.26□□□□□ -0.61
TCOF1-204ENST00000427724 EIF3HO15372 352 aaKnown RBP eCLIP11.26□□□□□ -0.615e-6■■■□□ 14.9
TCOF1-204ENST00000427724 WEE2P0C1S8 567 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms