RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 LZTR1Q8N653 840 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 FANCBQ8NB91 859 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 NLGN2Q8NFZ4 835 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 MAML3Q96JK9 1138 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 ZC3H10Q96K80 434 aaKnown RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 BTBD6Q96KE9 485 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 SNX22Q96L94 193 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 C7orf25Q9BPX7 421 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 KRIT1O00522 736 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 SLC16A6O15403 523 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 GAS2O43903 313 aaKnown RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 TACR1P25103 407 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 POLD2P49005 469 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 MGAT2Q10469 447 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 KANSL1Q7Z3B3 1105 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 TDRD7Q8NHU6 1098 aaKnown RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 KCNG4Q8TDN1 519 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 CSGALNACT1Q8TDX6 532 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 AFG1LQ8WV93 481 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 ATP6V1E2Q96A05 226 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 TRIM47Q96LD4 638 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 FDXACB1Q9BRP7 624 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 SENP6Q9GZR1 1112 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 PAIP1Q9H074 479 aaKnown RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 GHITMQ9H3K2 345 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 GREM2Q9H772 168 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 ELAC1Q9H777 363 aaKnown RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 PREBQ9HCU5 417 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 HAUS2Q9NVX0 235 aa5.75□□□□□ -1.49
VPS13A-207ENST00000419472 GMPR2Q9P2T1 348 aaKnown RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-207ENST00000419472 RTN3O95197 1032 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 RPL10P27635 214 aaKnown RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 SLC6A9P48067 706 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 EPHA5P54756 1037 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 DMTNQ08495 405 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 LRP8Q14114 963 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 CYP4F22Q6NT55 531 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 BRINP3Q76B58 766 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 RIOX2Q8IUF8 465 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 DTWD1Q8N5C7 304 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 GDF15Q99988 308 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 WNT8AQ9H1J5 351 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 TBC1D23Q9NUY8 699 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 TMEM160Q9NX00 188 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 ZFYVE9O95405 1425 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 NKTRP30414 1462 aaKnown RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 MYO5BQ9ULV0 1848 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 MT-ND5P03915 603 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 NTRK1P04629 796 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 HSPA5P11021 654 aaKnown RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 HDCP19113 662 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 EN2P19622 333 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 ERV3-1Q14264 604 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 GJC2Q5T442 439 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 THEMIS2Q5TEJ8 643 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 TANGO2Q6ICL3 276 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 BORAQ6PGQ7 559 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 BTNL9Q6UXG8 535 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 CYP2R1Q6VVX0 501 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 USP49Q70CQ1 688 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 OTUD7AQ8TE49 926 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 MRGPRX4Q96LA9 322 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 COG8Q96MW5 612 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 ASB2Q96Q27 587 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 JMJD4Q9H9V9 463 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 CD248Q9HCU0 757 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 KRT84Q9NSB2 600 aa5.74□□□□□ -1.49
VPS13A-207ENST00000419472 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 CWC25Q9NXE8 425 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-207ENST00000419472 PIK3R4Q99570 1358 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 PLEKHG1Q9ULL1 1385 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 A0A087WZ62 844 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 AMPD1P23109 780 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 ATP2B3Q16720 1220 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 UNC13DQ70J99 1090 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 TEX11Q8IYF3 940 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 SPPL3Q8TCT6 385 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 IPCEF1Q8WWN9 437 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 EZH1Q92800 747 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 COX4I2Q96KJ9 171 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 TDP1Q9NUW8 608 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 RGS17Q9UGC6 210 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 SIT1Q9Y3P8 196 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 SETBP1Q9Y6X0 1596 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 NCOA3Q9Y6Q9 1424 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 CFAP65Q6ZU64 1925 aaKnown RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 A1BGP04217 495 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 HNRNPA1P09651 372 aaKnown RBP eCLIP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 MTHFD1P11586 935 aaKnown RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 GJA4P35212 333 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 WAPLQ7Z5K2 1190 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 PIWIL2Q8TC59 973 aaKnown RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 ST8SIA4Q92187 359 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 UBL7Q96S82 380 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 C1orf43Q9BWL3 253 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 LSM14BQ9BX40 385 aaKnown RBP5.73□□□□□ -1.49
VPS13A-207ENST00000419472 BTBD7Q9P203 1132 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 MYOTQ9UBF9 498 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 ZHX1Q9UKY1 873 aaPredicted RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms