RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 KIAA1841Q6NSI8 718 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 PRSS55Q6UWB4 352 aaPredicted RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 NT5DC4Q86YG4 428 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 MRPL43Q8N983 215 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 OR5B17Q8NGF7 314 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 PLEKHO2Q8TD55 490 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 RIN2Q8WYP3 895 aaPredicted RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 CGRRF1Q99675 332 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 GZF1Q9H116 711 aaPredicted RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 MRPL17Q9NRX2 175 aaKnown RBP13.5□□□□□ -0.25
SKA1-203ENST00000417656 CTNND2Q9UQB3 1225 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 SCN1AP35498 2009 aa13.5□□□□□ -0.25
SKA1-203ENST00000417656 ANO9A1A5B4 782 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 PSMA7O14818 248 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 MBD3O95983 291 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 ITGB3P05106 788 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 POLR2BP30876 1174 aaKnown RBP13.49□□□□□ -0.25
SKA1-203ENST00000417656 RBM10P98175 930 aaKnown RBP13.49□□□□□ -0.25
SKA1-203ENST00000417656 STIM1Q13586 685 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 MYBPC2Q14324 1141 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 SURF1Q15526 300 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 EDRF1Q3B7T1 1238 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 KIAA0319Q5VV43 1072 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 CENPPQ6IPU0 288 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 EP400NLQ6ZTU2 488 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 CEP57Q86XR8 500 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 WDR49Q8IV35 697 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 C1orf127Q8N9H9 656 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 TRIML1Q8N9V2 468 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 VN1R2Q8NFZ6 395 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 TMEM174Q8WUU8 243 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 MFSD14AQ96MC6 490 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 FNBP1Q96RU3 617 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 POP1Q99575 1024 aaKnown RBP13.49□□□□□ -0.25
SKA1-203ENST00000417656 TSG101Q99816 390 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 TTPALQ9BTX7 342 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 CHST7Q9NS84 486 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 INTS13Q9NVM9 706 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 CLDND1Q9NY35 253 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 IRAK3Q9Y616 596 aa13.49□□□□□ -0.25
SKA1-203ENST00000417656 PPP1R3GB7ZBB8 358 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 PIRO00625 290 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 SPTLC1O15269 473 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 TRAPPC3O43617 180 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 LILRB3O75022 631 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 CLASP2O75122 1294 aaKnown RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 TBX10O75333 385 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 AKAP3O75969 853 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 GLP2RO95838 553 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 TNNC2P02585 160 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 CNPP09543 421 aaKnown RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 RPL17P18621 184 aaKnown RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 FGFR3P22607 806 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 CCNE1P24864 410 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 RPL13P26373 211 aaKnown RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 PPP1R2P41236 205 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 AARSP49588 968 aaKnown RBP eCLIP13.48□□□□□ -0.25
SKA1-203ENST00000417656 COL19A1Q14993 1142 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 PSMD5Q16401 504 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 ANKRD40Q6AI12 368 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 SCARA3Q6AZY7 606 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 LLGL2Q6P1M3 1020 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 EFHBQ8N7U6 833 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 CACTINQ8WUQ7 758 aaKnown RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 NELFBQ8WX92 580 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 PIK3R5Q8WYR1 880 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 PABPC5Q96DU9 382 aaKnown RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 EEF2KMTQ96G04 330 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 ANKRD36BP1Q96IX9 119 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 SUSD3Q96L08 255 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 ZNF560Q96MR9 790 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 UBE2ZQ9H832 354 aaPredicted RBP13.48□□□□□ -0.25
SKA1-203ENST00000417656 SIX4Q9UIU6 781 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 ITGA11Q9UKX5 1188 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 FRMD4BQ9Y2L6 1034 aa13.48□□□□□ -0.25
SKA1-203ENST00000417656 LRRIQ3A6PVS8 624 aaPredicted RBP13.47□□□□□ -0.25
SKA1-203ENST00000417656 TEX28O15482 410 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 KRT19P08727 400 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 TNNI1P19237 187 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 DLG4P78352 724 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 LRRC63Q05C16 580 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 PAK1Q13153 545 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 ADAM9Q13443 819 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 DSTYKQ6XUX3 929 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 GLYCTKQ8IVS8 523 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 ZC3H3Q8IXZ2 948 aaKnown RBP13.47□□□□□ -0.25
SKA1-203ENST00000417656 FAM186BQ8IYM0 893 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 CXorf38Q8TB03 319 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 DHTKD1Q96HY7 919 aaPredicted RBP13.47□□□□□ -0.25
SKA1-203ENST00000417656 KLHL5Q96PQ7 755 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 CDCA3Q99618 268 aaPredicted RBP13.47□□□□□ -0.25
SKA1-203ENST00000417656 EMILIN2Q9BXX0 1053 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 RXFP1Q9HBX9 757 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 THEGQ9P2T0 379 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 BARX2Q9UMQ3 279 aaPredicted RBP13.47□□□□□ -0.25
SKA1-203ENST00000417656 PCDHB8Q9UN66 801 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 AGAP1Q9UPQ3 857 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 SSX2IPQ9Y2D8 614 aa13.47□□□□□ -0.25
SKA1-203ENST00000417656 BRWD1Q9NSI6 2320 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms