RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 FPR1P21462 350 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 PCSK1P29120 753 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 PIK3CBP42338 1070 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 CNGB1Q14028 1251 aaPredicted RBP5.71□□□□□ -1.5
VPS54-204ENST00000416400 DHX8Q14562 1220 aaKnown RBP5.71□□□□□ -1.5
VPS54-204ENST00000416400 FAM214AQ32MH5 1076 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 FLYWCH1Q4VC44 716 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 C1orf228Q6PIY5 440 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 ZNF572Q7Z3I7 529 aaPredicted RBP5.71□□□□□ -1.5
VPS54-204ENST00000416400 ELOA2Q8IYF1 753 aaPredicted RBP5.71□□□□□ -1.5
VPS54-204ENST00000416400 MB21D1Q8N884 522 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 ATXN2LQ8WWM7 1075 aaKnown RBP5.71□□□□□ -1.5
VPS54-204ENST00000416400 PHKBQ93100 1093 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 SGCZQ96LD1 299 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 ENKD1Q9H0I2 346 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 SPON1Q9HCB6 807 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 KIAA1586Q9HCI6 787 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 CPA4Q9UI42 421 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 PCDHA1Q9Y5I3 950 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 ACTL7AQ9Y615 435 aa5.71□□□□□ -1.5
VPS54-204ENST00000416400 GOLGA6L6A8MZA4 724 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 B8ZZF3 427 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 NT5C1B-RDH14C9J2C7 533 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 FOXN3O00409 490 aaPredicted RBP5.7□□□□□ -1.5
VPS54-204ENST00000416400 KPNA5O15131 536 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 STC2O76061 302 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 CD1AP06126 327 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 RAP2AP10114 183 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 KITP10721 976 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 BRAFP15056 766 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 SLC7A1P30825 629 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 PRIM2P49643 509 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 FLT3LGP49771 235 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 BTKQ06187 659 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 STK3Q13188 491 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 ZRSR2Q15696 482 aaKnown RBP5.7□□□□□ -1.5
VPS54-204ENST00000416400 FAM47AQ5JRC9 791 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 KHDC1LQ5JSQ8 128 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 MAMDC4Q6UXC1 1216 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 DPP9Q86TI2 863 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 ZNF808Q8N4W9 903 aaPredicted RBP5.7□□□□□ -1.5
VPS54-204ENST00000416400 STON2Q8WXE9 905 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 ANKS1AQ92625 1134 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 EDAQ92838 391 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 RIPOR3Q96MK2 946 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 GPR20Q99678 358 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 KRTAP9-8Q9BYQ0 159 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 CD248Q9HCU0 757 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 FNIP2Q9P278 1114 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 OGDHLQ9ULD0 1010 aa5.7□□□□□ -1.5
VPS54-204ENST00000416400 RUVBL1Q9Y265 456 aaKnown RBP5.7□□□□□ -1.5
VPS54-204ENST00000416400 ZMYM3Q14202 1370 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 ABHD14A-ACY1A0A1B0GW23 586 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 F2RL2O00254 374 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 CREB3O43889 395 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 SNRPA1P09661 255 aaKnown RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 ALOX15P16050 662 aaPredicted RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 NPR1P16066 1061 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 MGAT1P26572 445 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 PRDX5P30044 214 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 ALDH1A3P47895 512 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 MAN2A2P49641 1150 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 CASP5P51878 434 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 CREMQ03060 361 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 EFEMP1Q12805 493 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 CHAF1AQ13111 956 aaPredicted RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 AFMIDQ63HM1 303 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 EFCAB12Q6NXP0 572 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 DOK3Q7L591 496 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 PLXDC1Q8IUK5 500 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 PALM2Q8IXS6 379 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 OR2C3Q8N628 320 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 DCBLD1Q8N8Z6 715 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 MDGA1Q8NFP4 955 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 ZFP28Q8NHY6 868 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 DEPTORQ8TB45 409 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 SELENOOQ9BVL4 669 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 GPR87Q9BY21 358 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 C11orf54Q9H0W9 315 aaPredicted RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 ZNF287Q9HBT7 754 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 PTPRHQ9HD43 1115 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 PNPLA8Q9NP80 782 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 GNL3LQ9NVN8 582 aaKnown RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 PIH1D1Q9NWS0 290 aaKnown RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 AURKAIP1Q9NWT8 199 aaPredicted RBP5.69□□□□□ -1.5
VPS54-204ENST00000416400 POGKQ9P215 609 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 PCDHA6Q9UN73 950 aa5.69□□□□□ -1.5
VPS54-204ENST00000416400 ISM1B1AKI9 464 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 MYO1FO00160 1098 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 TCEA3O75764 348 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 HK1P19367 917 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 PIK3CGP48736 1102 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 ADAM17P78536 824 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 FAM83BQ5T0W9 1011 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 PPP1R3BQ86XI6 285 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 XYLT1Q86Y38 959 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 FAM90A1Q86YD7 464 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 CELF5Q8N6W0 485 aaKnown RBP5.68□□□□□ -1.5
VPS54-204ENST00000416400 TFAP2CQ92754 450 aa5.68□□□□□ -1.5
VPS54-204ENST00000416400 SUCLG2Q96I99 432 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms