RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 EPHB4P54760 987 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 POLR2FP61218 127 aaKnown RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 WDR5P61964 334 aaKnown RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 ZBED6P86452 979 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 APBA1Q02410 837 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 DSC1Q08554 894 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 TMEM240Q5SV17 173 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 IQCEQ6IPM2 695 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF365Q70YC5 407 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF397Q8NF99 534 aaPredicted RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 BAP1Q92560 729 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 TATDN2Q93075 761 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 DDX27Q96GQ7 796 aaKnown RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 HPDLQ96IR7 371 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 PI4K2AQ9BTU6 479 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 STK33Q9BYT3 514 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 IMPG2Q9BZV3 1241 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 APOBEC3GQ9HC16 384 aaKnown RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 LUC7L2Q9Y383 392 aaKnown RBP15.33■□□□□ 0.04
SF3B1-204ENST00000414963 NR2E3Q9Y5X4 410 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 LTBP2Q14767 1821 aa15.33■□□□□ 0.04
SF3B1-204ENST00000414963 AKR1B15C9JRZ8 316 aaPredicted RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 DGKIO75912 1065 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 POMCP01189 267 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 KRT19P08727 400 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 CASP14P31944 242 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 JAM2P57087 298 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 NOP14P78316 857 aaKnown RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 MYO1EQ12965 1108 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 TUSC3Q13454 348 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF699Q32M78 642 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 CNGA4Q8IV77 575 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 ARHGEF19Q8IW93 802 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 ABI1Q8IZP0 508 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 TC2NQ8N9U0 490 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 HERVK_113Q902F9 699 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 SYN2Q92777 582 aaPredicted RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 DNAJC7Q99615 494 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 LBHD1Q9BQE6 289 aaPredicted RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 MRPL9Q9BYD2 267 aaKnown RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 NUCKS1Q9H1E3 243 aaKnown RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 FAM124BQ9H5Z6 455 aaPredicted RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 UBE2TQ9NPD8 197 aaPredicted RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 TBC1D13Q9NVG8 400 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 DNAJC12Q9UKB3 198 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 ZMYND8Q9ULU4 1186 aaPredicted RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 INPP5FQ9Y2H2 1132 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 R3HCC1Q9Y3T6 440 aaKnown RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 NUB1Q9Y5A7 615 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 FHOD1Q9Y613 1164 aa15.32■□□□□ 0.04
SF3B1-204ENST00000414963 MKI67P46013 3256 aaKnown RBP15.32■□□□□ 0.04
SF3B1-204ENST00000414963 MFAP3LO75121 409 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 SYN1P17600 705 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 IBSPP21815 317 aaPredicted RBP15.31■□□□□ 0.04
SF3B1-204ENST00000414963 TBXAS1P24557 533 aaPredicted RBP15.31■□□□□ 0.04
SF3B1-204ENST00000414963 HNRNPH3P31942 346 aaKnown RBP15.31■□□□□ 0.04
SF3B1-204ENST00000414963 KRT9P35527 623 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 MFAP3P55082 362 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 LRMPQ12912 555 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 CUL2Q13617 745 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 UPP1Q16831 310 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 GJB7Q6PEY0 223 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 OTOP2Q7RTS6 562 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 CCDC186Q7Z3E2 898 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 CACNA2D4Q7Z3S7 1137 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 COLGALT2Q8IYK4 626 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 TMEM130Q8N3G9 435 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 OR8K1Q8NGG5 319 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 CPLX3Q8WVH0 158 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF689Q96CS4 500 aaPredicted RBP15.31■□□□□ 0.04
SF3B1-204ENST00000414963 KREMEN1Q96MU8 473 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 PANX2Q96RD6 677 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 BCO2Q9BYV7 579 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 NIF3L1Q9GZT8 377 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 GDAP2Q9NXN4 497 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 AJAP1Q9UKB5 411 aaPredicted RBP15.31■□□□□ 0.04
SF3B1-204ENST00000414963 PDCD11Q14690 1871 aaKnown RBP15.31■□□□□ 0.04
SF3B1-204ENST00000414963 MICAL3Q7RTP6 2002 aa15.31■□□□□ 0.04
SF3B1-204ENST00000414963 PPEF2O14830 753 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 DDHD2O94830 711 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 FAM163BP0C2L3 166 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 P4HA1P13674 534 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 KCNJ6P48051 423 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 ADKP55263 362 aaKnown RBP15.3■□□□□ 0.04
SF3B1-204ENST00000414963 DEFB103AP81534 67 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 DRAP1Q14919 205 aaPredicted RBP15.3■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF667Q5HYK9 610 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 RASIP1Q5U651 963 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 SPOPLQ6IQ16 392 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 PDXDC1Q6P996 788 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 DCLRE1AQ6PJP8 1040 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 RRAGAQ7L523 313 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 LIMS2Q7Z4I7 341 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF280BQ86YH2 543 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 FMNL3Q8IVF7 1028 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 PPM1KQ8N3J5 372 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 PHOSPHO2Q8TCD6 241 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 SHC3Q92529 594 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 ZNF560Q96MR9 790 aa15.3■□□□□ 0.04
SF3B1-204ENST00000414963 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.3■□□□□ 0.048e-41■□□□□ 9.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms