RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CHP2O43745 196 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 EPHX4Q8IUS5 362 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 ANKRD27Q96NW4 1050 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CNOT8Q9UFF9 292 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CFAP43Q8NDM7 1665 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 SUZ12Q15022 739 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CC2D1AQ6P1N0 951 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 ABRAXAS1Q6UWZ7 409 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 KLHL4Q9C0H6 718 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CD209Q9NNX6 404 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 PSMC3IPQ9P2W1 217 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 SYNPO2Q9UMS6 1093 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 FAM47DPA6NHR8 397 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CCDC166P0CW27 439 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 ITGA3P26006 1051 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 MTERF2Q49AM1 385 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 DDI2Q5TDH0 399 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 SLITRK2Q9H156 845 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 DYRK3O43781 588 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 COPAP53621 1224 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CACHD1Q5VU97 1274 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 TIGD7Q6NT04 549 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 SCN4BQ8IWT1 228 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 DISP3Q9P2K9 1392 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 BAZ2BQ9UIF8 2168 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 RGS2P41220 211 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 HSD17B4P51659 736 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 OLFML1Q6UWY5 402 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 CENPLQ8N0S6 344 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 S100A13Q99584 98 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 RGS18Q9NS28 235 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 TRPC5OSA6NMA1 111 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 MFAP3LO75121 409 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 NDUFS3O75489 264 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF23P17027 643 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 RCVRNP35243 200 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 KBTBD12Q3ZCT8 623 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 NOL6Q9H6R4 1146 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 K7ERI5 159 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 ACADLP28330 430 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 RGS4P49798 205 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 MFSD4BQ5TF39 518 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 OSBPL8Q9BZF1 889 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 SPACA6W5XKT8 324 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 TMEM35BQ8NCS4 154 aa13.94□□□□□ -0.18
CCDC88A-204ENST00000413716 PSMD3O43242 534 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF394Q53GI3 561 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TMEM270Q6UE05 265 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 DDX53Q86TM3 631 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 SHCBP1Q8NEM2 672 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ALG13Q9NP73 1137 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 KLHL1Q9NR64 748 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ABHD10Q9NUJ1 306 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 YWHAQP27348 245 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 BCAR1P56945 870 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 LIN54Q6MZP7 749 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ARMC6Q6NXE6 501 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 SLC10A4Q96EP9 437 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 DBNDD2Q9BQY9 259 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 EMILIN3Q9NT22 766 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 SPASTQ9UBP0 616 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 MARCOQ9UEW3 520 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TRIM49BA6NDI0 452 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 FAM187AA6NFU0 413 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TRIM49D1C9J1S8 452 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 PTPN1P18031 435 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 GSPT2Q8IYD1 628 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 PROM2Q8N271 834 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TTC39CQ8N584 583 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 MIEF2Q96C03 454 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TOPORSQ9NS56 1045 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TNKSO95271 1327 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 SRGAP2O75044 1071 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 MSH3P20585 1137 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 NOS3P29474 1203 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 MTFR1Q15390 333 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF594Q96JF6 807 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 SOX11P35716 441 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TRIM72Q6ZMU5 477 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ZBTB1Q9Y2K1 713 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 NOS1P29475 1434 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 USP14P54578 494 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 LRRC41Q15345 812 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 TTC39BQ5VTQ0 682 aaPredicted RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 SEC16BQ96JE7 1060 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 ADGBQ8N7X0 1667 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 CLPTM1O96005 669 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 AGTP01019 485 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 FCGR1AP12314 374 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 C11orf96Q7Z7L8 435 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 NRDE2Q9H7Z3 1164 aa13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 XPO7Q9UIA9 1087 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-204ENST00000413716 DENND3A2RUS2 1198 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 KCNN4O15554 427 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 PLCG1P19174 1290 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SIX5Q8N196 739 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 SSNA1O43805 119 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 CYP27A1Q02318 531 aa13.92□□□□□ -0.18
CCDC88A-204ENST00000413716 RBBP4Q09028 425 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms