RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 PRMT7Q9NVM4 692 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-204ENST00000412568 ASNSD1Q9NWL6 643 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 KLHL14Q9P2G3 628 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 IP6K2Q9UHH9 426 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 FRMPD4Q14CM0 1322 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CPP00450 1065 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 SLC12A2P55011 1212 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CYP24A1Q07973 514 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 C4orf50Q6ZRC1 276 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 PDZD4Q76G19 769 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-204ENST00000412568 DCLK2Q8N568 766 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 HDAC7Q8WUI4 952 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 NIF3L1Q9GZT8 377 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 C17orf75Q9HAS0 396 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 STRIP2Q9ULQ0 834 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 SIK3Q9Y2K2 1263 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 ROBO3Q96MS0 1386 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 GJB6O95452 261 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CA4P22748 312 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CDH8P55286 799 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 BCAR1P56945 870 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 ANKRD20A3Q5VUR7 823 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CCDC197Q8NCU1 140 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 ZBTB10Q96DT7 871 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 WNK4Q96J92 1243 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 POLIQ9UNA4 740 aa11.84□□□□□ -0.51
PTPRF-204ENST00000412568 CYP3A7-CYP3A51PA0A087WV96 503 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 UPP2O95045 317 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 CYP3A7P24462 503 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 MSH2P43246 934 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 PMS2P54278 862 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 MEA1Q16626 185 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 WDR93Q6P2C0 686 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 PLEKHH3Q7Z736 793 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ATP6V1G3Q96LB4 118 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ZIM3Q96PE6 472 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 MROH8Q9H579 483 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 MAP3K20Q9NYL2 800 aaKnown RBP11.83□□□□□ -0.52
PTPRF-204ENST00000412568 IGKV6D-41A0A0C4DH26 115 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 PIK3CDO00329 1044 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 DDX3XO00571 662 aaKnown RBP eCLIP11.83□□□□□ -0.52
PTPRF-204ENST00000412568 CHRNA3P32297 505 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ICE2Q659A1 982 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 EMC1Q8N766 993 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 PARD3BQ8TEW8 1205 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ABCC6O95255 1503 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ASTN1O14525 1302 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 TBC1D12O60347 775 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 KRT10P13645 584 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ARSEP51690 589 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ERVK-9P63128 1117 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 FAM47EQ6ZV65 393 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 ANKMY2Q8IV38 441 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 MCUR1Q96AQ8 359 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 VPS33BQ9H267 617 aa11.83□□□□□ -0.52
PTPRF-204ENST00000412568 DBR1Q9UK59 544 aaKnown RBP11.83□□□□□ -0.52
PTPRF-204ENST00000412568 MYH2Q9UKX2 1941 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 CCDC78A2IDD5 438 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 I3L4J1 428 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 RPS6KA5O75582 802 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ITGA4P13612 1032 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PBX1P40424 430 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 C6orf118Q5T5N4 469 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 IZUMO3Q5VZ72 239 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ANO5Q75V66 913 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 KDELC2Q7Z4H8 507 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 SPATS2Q86XZ4 545 aaKnown RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 GPBP1L1Q9HC44 474 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ZFYVE28Q9HCC9 887 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 VAV3Q9UKW4 847 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 UBIAD1Q9Y5Z9 338 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 CXCL11O14625 94 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 CCNE2O96020 404 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 RALAP11233 206 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PLCB4Q15147 1175 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 TRIM72Q6ZMU5 477 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ACOT1Q86TX2 421 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ZBED8Q8IZ13 594 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 KCTD17Q8N5Z5 321 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 DNERQ8NFT8 737 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 TLR10Q9BXR5 811 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PDGFCQ9NRA1 345 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 TAS2R14Q9NYV8 317 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 UVRAGQ9P2Y5 699 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 TGFB1I1O43294 461 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 NPM3O75607 178 aaKnown RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 STAG3L1P0CL83 205 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 TSNAXIP1Q2TAA8 658 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 CENPUQ71F23 418 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 RPAINQ86UA6 219 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ATP2A3Q93084 1043 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 OSBPL8Q9BZF1 889 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PDE2AO00408 941 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ASAP2O43150 1006 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 AKAP5P24588 427 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 ANXA13P27216 316 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 BEX3Q00994 111 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 CDR2Q01850 454 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PPATQ06203 517 aa11.82□□□□□ -0.52
PTPRF-204ENST00000412568 PPP1R2P3Q6NXS1 205 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms