RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LBHD1Q9BQE6 289 aaPredicted RBP14.24□□□□□ -0.13
VPS54-203ENST00000409558 DDX20Q9UHI6 824 aaKnown RBP14.24□□□□□ -0.13
VPS54-203ENST00000409558 AGTPBP1Q9UPW5 1226 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 WDR91A4D1P6 747 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 VGLL4Q14135 290 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 ZDHHC18Q9NUE0 388 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 VNN1O95497 513 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 GH1P01241 217 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 TMEM191BP0C7N4 346 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 POTEJP0CG39 1038 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 PTGIRP43119 386 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 ACTN3Q08043 901 aaPredicted RBP14.24□□□□□ -0.13
VPS54-203ENST00000409558 TMED2Q15363 201 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 HOOK3Q86VS8 718 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 CEP57Q86XR8 500 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 VPS37BQ9H9H4 285 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 MROH7Q68CQ1 1323 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 IRF6O14896 467 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 CUL2Q13617 745 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 WDR72Q3MJ13 1102 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 LRRC34Q8IZ02 419 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 CACNA2D3Q8IZS8 1091 aa14.24□□□□□ -0.13
VPS54-203ENST00000409558 KLF6Q99612 283 aaPredicted RBP14.24□□□□□ -0.13
VPS54-203ENST00000409558 FHDC1Q9C0D6 1143 aaPredicted RBP14.24□□□□□ -0.13
VPS54-203ENST00000409558 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS54-203ENST00000409558 GPC3P51654 580 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 SKOR1P84550 965 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 EAPPQ56P03 285 aaPredicted RBP14.23□□□□□ -0.13
VPS54-203ENST00000409558 LIN9Q5TKA1 542 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 ABHD15Q6UXT9 468 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 ARHGEF2Q92974 986 aaKnown RBP14.23□□□□□ -0.13
VPS54-203ENST00000409558 ALG13Q9NP73 1137 aaKnown RBP14.23□□□□□ -0.13
VPS54-203ENST00000409558 PDGFCQ9NRA1 345 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 PCDHB2Q9Y5E7 798 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 PCDHA3Q9Y5H8 950 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 EXTL3O43909 919 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 CAPSQ13938 189 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 FKBP1CQ5VVH2 108 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 GPAT2Q6NUI2 795 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 MREGQ8N565 214 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 GPRASP2Q96D09 838 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 SEC16BQ96JE7 1060 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 APOL6Q9BWW8 343 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 LRRC37AA6NMS7 1700 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 FOCADQ5VW36 1801 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 A0A087WUV0 522 aaPredicted RBP14.23□□□□□ -0.13
VPS54-203ENST00000409558 GOLGA8RI6L899 631 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 SGK1O00141 431 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 P3H1Q32P28 736 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 PNMA8AQ86V59 439 aaPredicted RBP14.23□□□□□ -0.13
VPS54-203ENST00000409558 DDX1Q92499 740 aaKnown RBP14.23□□□□□ -0.13
VPS54-203ENST00000409558 TMEM121Q9BTD3 319 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 PLVAPQ9BX97 442 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 IVNS1ABPQ9Y6Y0 642 aa14.23□□□□□ -0.13
VPS54-203ENST00000409558 MEFVO15553 781 aaPredicted RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 LACTBP83111 547 aaPredicted RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 HSPH1Q92598 858 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 OSBPL8Q9BZF1 889 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 HOXC10Q9NYD6 342 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 GAS8O95995 478 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 DHX34Q14147 1143 aaKnown RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 NUGGCQ68CJ6 796 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 EFCAB13Q8IY85 973 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 NETO2Q8NC67 525 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 ZNF606Q8WXB4 792 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 CPB2Q96IY4 423 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 SAYSD1Q9NPB0 183 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 CSADQ9Y600 493 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 RIPK2O43353 540 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 RPS6KA5O75582 802 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 ARIH2O95376 493 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 FAM107AO95990 144 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 GZMAP12544 262 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 ZNF568Q3ZCX4 644 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 GKAP1Q5VSY0 366 aaPredicted RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 IZUMO3Q5VZ72 239 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 DNAJC24Q6P3W2 148 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 SCYL2Q6P3W7 929 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 UBA3Q8TBC4 463 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 CALN1Q9BXU9 219 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 KIF9Q9HAQ2 790 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 KAT6AQ92794 2004 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 GRIN3BO60391 1043 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 YY1P25490 414 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 GPS1Q13098 491 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 FASTKD3Q14CZ7 662 aaKnown RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 E2F5Q15329 346 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 C11orf63Q6NUN7 778 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 CATSPERGQ6ZRH7 1159 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 C4orf33Q8N1A6 199 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 KLRG1Q96E93 195 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 XPO6Q96QU8 1125 aaKnown RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 C12orf65Q9H3J6 166 aaKnown RBP14.22□□□□□ -0.13
VPS54-203ENST00000409558 FGFR1OP2Q9NVK5 253 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 HAUS2Q9NVX0 235 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 DNPEPQ9ULA0 475 aa14.22□□□□□ -0.13
VPS54-203ENST00000409558 PLA2G6O60733 806 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 MYCNP04198 464 aaPredicted RBP14.21□□□□□ -0.13
VPS54-203ENST00000409558 CXCL8P10145 99 aa14.21□□□□□ -0.13
VPS54-203ENST00000409558 MUTP22033 750 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms