RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SMARCA1P28370 1054 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 ATP5OP48047 213 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 NOP9Q86U38 636 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 CDR2LQ86X02 465 aaPredicted RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 AGAP11Q8TF27 550 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 IWS1Q96ST2 819 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 TTC1Q99614 292 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 METTL5Q9NRN9 209 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 GABBR1Q9UBS5 961 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 DIS3Q9Y2L1 958 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 LAMB4A4D0S4 1761 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 YWHABP31946 246 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 MRPS35P82673 323 aaKnown RBP12.62□□□□□ -0.39
HMGB1-206ENST00000405805 HSP90AA5PQ58FG0 334 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 SWSAP1Q6NVH7 229 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 DNAJC24Q6P3W2 148 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 MFN1Q8IWA4 741 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 MREGQ8N565 214 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 LRRC57Q8N9N7 239 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 CCDC110Q8TBZ0 833 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 HSPH1Q92598 858 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 CFAP57Q96MR6 1250 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 C15orf41Q9Y2V0 281 aa12.62□□□□□ -0.39
HMGB1-206ENST00000405805 TAF1P21675 1872 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SPEF2Q9C093 1822 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 ROBO1Q9Y6N7 1651 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 OATP04181 439 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 P4HBP07237 508 aaKnown RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SRGAP2CP0DJJ0 459 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 NQO1P15559 274 aaKnown RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 MARK3P27448 753 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SERPINB6P35237 376 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 CHKAP35790 457 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 ERMARDQ5T6L9 678 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 STRIP1Q5VSL9 837 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 OPTNQ96CV9 577 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 CFAP36Q96G28 342 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 NAF1Q96HR8 494 aaKnown RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SLC13A1Q9BZW2 595 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 KCNH7Q9NS40 1196 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 RARGP13631 454 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 UBAP2Q5T6F2 1119 aaKnown RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 RFX6Q8HWS3 928 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 CD302Q8IX05 232 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 TMEM39BQ9GZU3 492 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 DNAJC18Q9H819 358 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 N4BP2Q86UW6 1770 aaPredicted RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SYNJ2BP-COX16A0A087WUM0 186 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 KLHL33A6NCF5 533 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 MT-ND3P03897 115 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 INHBAP08476 426 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 COPS2P61201 443 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 PHEXP78562 749 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 CRY2Q49AN0 593 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 ATP13A4Q4VNC1 1196 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 THNSL1Q8IYQ7 743 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 NR1H4Q96RI1 486 aaPredicted RBP12.61□□□□□ -0.39
HMGB1-206ENST00000405805 OSBPL8Q9BZF1 889 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 SLCO1B3Q9NPD5 702 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 TXLNGQ9NUQ3 528 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 COX16Q9P0S2 106 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 STOML1Q9UBI4 398 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 ZFP69BQ9UJL9 534 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 LAMA4Q16363 1823 aa12.61□□□□□ -0.39
HMGB1-206ENST00000405805 HOXA10P31260 410 aaPredicted RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 RFC5P40937 340 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 NT5C2P49902 561 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 AUHQ13825 339 aaKnown RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 ATL2Q8NHH9 583 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 DNAJC9Q8WXX5 260 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 FAM163AQ96GL9 167 aaPredicted RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 HES6Q96HZ4 224 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 PHACTR1Q9C0D0 580 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 KCNMB3Q9NPA1 279 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 NAALADL1Q9UQQ1 740 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 NEU2Q9Y3R4 380 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 RBAK-RBAKDNI3L0D1 243 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 CDH16O75309 829 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 CYP11B1P15538 503 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 MAGEA4P43358 317 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 KCNT1Q5JUK3 1230 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 BZW1Q7L1Q6 419 aaKnown RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 CCDC33Q8N5R6 958 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 SMC1BQ8NDV3 1235 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 TMEM143Q96AN5 459 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 MTFR1LQ9H019 292 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 ATF5Q9Y2D1 282 aaPredicted RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 MYH13Q9UKX3 1938 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 GYG2O15488 501 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 CBX6O95503 412 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 ESRRAP11474 423 aaPredicted RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 SAT1P21673 171 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 RXRBP28702 533 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 GNA15P30679 374 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 SREBF1P36956 1147 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 MRPS9P82933 396 aaKnown RBP12.6□□□□□ -0.39
HMGB1-206ENST00000405805 PPP2R5CQ13362 524 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 DUPD1Q68J44 220 aa12.6□□□□□ -0.39
HMGB1-206ENST00000405805 TTC27Q6P3X3 843 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms