RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 BACE1P56817 501 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 PDE1BQ01064 536 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 AADACL2Q6P093 401 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 SCYL3Q8IZE3 742 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 CCNYQ8ND76 341 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 OR6B3Q8NGW1 331 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 IL31RAQ8NI17 732 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 TTC17Q96AE7 1141 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 TAP1Q03518 808 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 NIPA1Q7RTP0 329 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 LRRC71Q8N4P6 559 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 CDKL2Q92772 493 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 KIAA1683Q9H0B3 1180 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 FGFR1OP2Q9NVK5 253 aa19.62■□□□□ 0.73
USP48-204ENST00000400301 ANKRD63C9JTQ0 380 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 NKRFO15226 690 aaKnown RBP eCLIP19.61■□□□□ 0.73
USP48-204ENST00000400301 HIF1AQ16665 826 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 SGSM1Q2NKQ1 1148 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 NBPF12Q5TAG4 269 aaPredicted RBP19.61■□□□□ 0.73
USP48-204ENST00000400301 GPAT2Q6NUI2 795 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 N4BP2Q86UW6 1770 aaPredicted RBP19.61■□□□□ 0.73
USP48-204ENST00000400301 DPY19L2Q6NUT2 758 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 SPATA21Q7Z572 469 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 PARP9Q8IXQ6 854 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 ATP11CQ8NB49 1132 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 EPS8L1Q8TE68 723 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 SCFD2Q8WU76 684 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 TRABDQ9H4I3 376 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 SLC38A10Q9HBR0 1119 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 MAGEA4P43358 317 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 KIF22Q14807 665 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 ZC3H18Q86VM9 953 aaKnown RBP19.61■□□□□ 0.73
USP48-204ENST00000400301 CDR2LQ86X02 465 aaPredicted RBP19.61■□□□□ 0.73
USP48-204ENST00000400301 LRRC34Q8IZ02 419 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 SNX25Q9H3E2 840 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 COMMD10Q9Y6G5 202 aa19.61■□□□□ 0.73
USP48-204ENST00000400301 A0A0G2JND7 137 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 BRD2P25440 801 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 ARL4AP40617 200 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 RPL21P46778 160 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 MTM1Q13496 603 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 ACSF2Q96CM8 615 aaPredicted RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 CDH6P55285 790 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 CENPCQ03188 943 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 RNASELQ05823 741 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 MREGQ8N565 214 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 C1orf131Q8NDD1 294 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 PPP4R1Q8TF05 950 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 CDC42EP4Q9H3Q1 356 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 GGA3Q9NZ52 723 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 ZC3H11AO75152 810 aaKnown RBP eCLIP19.6■□□□□ 0.731e-8■■□□□ 14.5
USP48-204ENST00000400301 RARAP10276 462 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 TNFAIP2Q03169 654 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 NFX1Q12986 1120 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 GRM1Q13255 1194 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 RCN2Q14257 317 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 MUM1Q2TAK8 710 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 KLHL38Q2WGJ6 581 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 SLC9A9Q8IVB4 645 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 EIF1ADQ8N9N8 165 aaKnown RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 RNF169Q8NCN4 708 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 USP15Q9Y4E8 981 aaPredicted RBP19.6■□□□□ 0.73
USP48-204ENST00000400301 FRMD3A2A2Y4 597 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 RFC5P40937 340 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 CLEC16AQ2KHT3 1053 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 CATSPER4Q7RTX7 472 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 NIF3L1Q9GZT8 377 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 DCTN4Q9UJW0 460 aa19.6■□□□□ 0.73
USP48-204ENST00000400301 IQCKQ8N0W5 287 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 C4orf33Q8N1A6 199 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 AKT1S1Q96B36 256 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 MYCBPQ99417 103 aaPredicted RBP19.59■□□□□ 0.73
USP48-204ENST00000400301 ECT2Q9H8V3 914 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 DCTN3O75935 186 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 SUPT20HL2P0C7V6 817 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 PIGHQ14442 188 aaPredicted RBP19.59■□□□□ 0.73
USP48-204ENST00000400301 MXD4Q14582 209 aaPredicted RBP19.59■□□□□ 0.73
USP48-204ENST00000400301 HES6Q96HZ4 224 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 LRRC37BQ96QE4 947 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 ETNK1Q9HBU6 452 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 CCT8L1PA6NM43 557 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 PIK3R2O00459 728 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 XPOTO43592 962 aaKnown RBP19.59■□□□□ 0.73
USP48-204ENST00000400301 KRT10P13645 584 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 TTLL4Q14679 1199 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 SAMD3Q8N6K7 520 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 KLC2Q9H0B6 622 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 TPX2Q9ULW0 747 aaKnown RBP19.59■□□□□ 0.73
USP48-204ENST00000400301 ARL2BPQ9Y2Y0 163 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 NUP98P52948 1817 aa19.59■□□□□ 0.73
USP48-204ENST00000400301 KRT37O76014 449 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 EIF3EP60228 445 aaKnown RBP19.58■□□□□ 0.73
USP48-204ENST00000400301 SMTNL2Q2TAL5 461 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 ASTE1Q2TB18 679 aaPredicted RBP19.58■□□□□ 0.73
USP48-204ENST00000400301 PDZD4Q76G19 769 aaPredicted RBP19.58■□□□□ 0.73
USP48-204ENST00000400301 SDCCAG8Q86SQ7 713 aaPredicted RBP19.58■□□□□ 0.73
USP48-204ENST00000400301 BCAS3Q9H6U6 928 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 ARHGAP42A6NI28 874 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 M0QZ92 97 aa19.58■□□□□ 0.73
USP48-204ENST00000400301 ADRB2P07550 413 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms