RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 DDB1Q16531 1140 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 HHATQ5VTY9 493 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 MFSD5Q6N075 450 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 DSTYKQ6XUX3 929 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 FOXJ1Q92949 421 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 HAUS1Q96CS2 278 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 DYDC2Q96IM9 177 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 CCDC77Q9BR77 488 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 TRIM4Q9C037 500 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 SAYSD1Q9NPB0 183 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 PRKAG3Q9UGI9 489 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 ANAPC7Q9UJX3 599 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 DOCK2Q92608 1830 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 C2orf71A6NGG8 1288 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 FAM47DPA6NHR8 397 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 O00370 1275 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 KRT36O76013 467 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 KRT5P13647 590 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 RRM1P23921 792 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 BRD2P25440 801 aaKnown RBP10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 RPA1P27694 616 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 SPDYCQ5MJ68 293 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 NOP9Q86U38 636 aaKnown RBP10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 PHC3Q8NDX5 983 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 ANKK1Q8NFD2 765 aa10.5□□□□□ -0.73
PTCHD4-202ENST00000398738 NUP98P52948 1817 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 GOLGA8CPA6NN73 597 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 SOCS7O14512 581 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 NVLO15381 856 aaKnown RBP10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 BANF1O75531 89 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 ZSCAN5DPP0CG00 497 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 RPA3P35244 121 aaPredicted RBP10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 RAB27AP51159 221 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 GTF2IP78347 998 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 PKN2Q16513 984 aaKnown RBP10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 OXLD1Q5BKU9 147 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 MDH1BQ5I0G3 518 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 ZNF804AQ7Z570 1209 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 CCNJLQ8IV13 435 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 SLFN12Q8IYM2 578 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 DHX38Q92620 1227 aaKnown RBP10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 SNF8Q96H20 258 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 PARVGQ9HBI0 331 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 AGPAT3Q9NRZ7 376 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 ZFP69BQ9UJL9 534 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 SNED1Q8TER0 1413 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 PI4K2BG5E9Z4 385 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 IFNB1P01574 187 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 HSPA6P17066 643 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 GNAZP19086 355 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 PIK3CAP42336 1068 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 PPP3CAQ08209 521 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 VPS52Q8N1B4 723 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 ANKRD35Q8N283 1001 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 RBM15Q96T37 977 aaKnown RBP eCLIP10.49□□□□□ -0.739e-7■■■□□ 18.6
PTCHD4-202ENST00000398738 NMRK1Q9NWW6 199 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 USH1CQ9Y6N9 552 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 THSD7AQ9UPZ6 1657 aa10.49□□□□□ -0.73
PTCHD4-202ENST00000398738 A0A1W2PPM1 405 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 MSH4O15457 936 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CDH16O75309 829 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 GAS8O95995 478 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 BMP3P12645 472 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ATP6V1C1P21283 382 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 MAPK4P31152 587 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 FASTKD3Q14CZ7 662 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 HYIQ5T013 277 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SNX30Q5VWJ9 437 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 IZUMO3Q5VZ72 239 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 TPTE2Q6XPS3 522 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ANKMY2Q8IV38 441 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ZC3H3Q8IXZ2 948 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 MCUR1Q96AQ8 359 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CYTH2Q99418 400 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 TRABDQ9H4I3 376 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 UBR2Q8IWV8 1755 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CAPN9O14815 690 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 TP73O15350 636 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SLC16A3O15427 465 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ATP9AO75110 1047 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ZBED4O75132 1171 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CFBP00751 764 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CCNYL3P0C7X3 344 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 T-ENOLP0DO92 83 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CCNB1P14635 433 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SP100P23497 879 aaPredicted RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 RANBP1P43487 201 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CDR2Q01850 454 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 BFSP1Q12934 665 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 KPNB1Q14974 876 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SLC1A5Q15758 541 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 RNF43Q68DV7 783 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 FOXR2Q6PJQ5 311 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 ISLR2Q6UXK2 745 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 PPP1R21Q6ZMI0 780 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CYFIP1Q7L576 1253 aa10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 AGGF1Q8N302 714 aaeCLIP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SCG3Q8WXD2 468 aaKnown RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 SLC7A6OSQ96CW6 309 aaPredicted RBP10.48□□□□□ -0.73
PTCHD4-202ENST00000398738 CBWD1Q9BRT8 395 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms