RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 PTPN2P17706 415 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 RPS9P46781 194 aaKnown RBP9.63□□□□□ -0.87
CAPN3-208ENST00000397204 CSTF1Q05048 431 aaKnown RBP9.63□□□□□ -0.87
CAPN3-208ENST00000397204 ORC2Q13416 577 aaPredicted RBP9.63□□□□□ -0.87
CAPN3-208ENST00000397204 UBXN2BQ14CS0 331 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 NPAS3Q8IXF0 933 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 NECAB1Q8N987 351 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 ZNF461Q8TAF7 563 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 ERMNQ8TAM6 284 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 DEPTORQ8TB45 409 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 KIFAP3Q92845 792 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 IFT74Q96LB3 600 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 PPP1R10Q96QC0 940 aaKnown RBP9.63□□□□□ -0.87
CAPN3-208ENST00000397204 CCDC113Q9H0I3 377 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 TMEM60Q9H2L4 133 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 LTB4R2Q9NPC1 389 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 MTRRQ9UBK8 725 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 MRPS17Q9Y2R5 130 aaKnown RBP9.63□□□□□ -0.87
CAPN3-208ENST00000397204 PCDHGA2Q9Y5H1 932 aa9.63□□□□□ -0.87
CAPN3-208ENST00000397204 CACNA1BQ00975 2339 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 K7ERI5 159 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 MICAL2O94851 1124 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ABLIM3O94929 683 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 JUNDP17535 347 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ELF1P32519 619 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 MCM7P33993 719 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 SAFBQ15424 915 aaKnown RBP eCLIP9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ME3Q16798 604 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 UPP1Q16831 310 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 NT5DC1Q5TFE4 455 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ATF7IP2Q5U623 682 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 EEF1DP3Q658K8 133 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 SLC8B1Q6J4K2 584 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 CD300LGQ6UXG3 332 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ZNF852Q6ZMS4 543 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 DCLK2Q8N568 766 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ZBTB44Q8NCP5 570 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 NSUN7Q8NE18 718 aaKnown RBP9.62□□□□□ -0.87
CAPN3-208ENST00000397204 BSNDQ8WZ55 320 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 NELL1Q92832 810 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 GTF3C6Q969F1 213 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ELSPBP1Q96BH3 223 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 MCRS1Q96EZ8 462 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 FAM126AQ9BYI3 521 aaPredicted RBP9.62□□□□□ -0.87
CAPN3-208ENST00000397204 CXCL16Q9H2A7 254 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 HCFC1R1Q9NWW0 138 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 ZSCAN32Q9NX65 697 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 USP20Q9Y2K6 914 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 GDAQ9Y2T3 454 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 MTF2Q9Y483 593 aaPredicted RBP9.62□□□□□ -0.87
CAPN3-208ENST00000397204 CDY1Q9Y6F8 540 aa9.62□□□□□ -0.87
CAPN3-208ENST00000397204 DOCK6Q96HP0 2047 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 SMIM28A0A1B0GU29 152 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 ARHGEF37A1IGU5 675 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 MAN2B1O00754 1011 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 WNT7AO00755 349 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 ZNF197O14709 1029 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TBC1D4O60343 1298 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 LRG1P02750 347 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 RHOP08100 348 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 ATF2P15336 505 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 LIG1P18858 919 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 CD72P21854 359 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 IGFBP6P24592 240 aaPredicted RBP9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TKTP29401 623 aaKnown RBP9.61□□□□□ -0.87
CAPN3-208ENST00000397204 RPL9P32969 192 aaKnown RBP9.61□□□□□ -0.87
CAPN3-208ENST00000397204 CLCNKBP51801 687 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 YARSP54577 528 aaKnown RBP9.61□□□□□ -0.87
CAPN3-208ENST00000397204 ADCY1Q08828 1119 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 PDIA5Q14554 519 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 XKR4Q5GH76 650 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TPGS2Q68CL5 300 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TANGO2Q6ICL3 276 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 ALKAL1Q6UXT8 129 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TCEAL8Q8IYN2 117 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 SECISBP2LQ93073 1101 aaKnown RBP9.61□□□□□ -0.87
CAPN3-208ENST00000397204 KXD1Q9BQD3 176 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TOPORSQ9NS56 1045 aaPredicted RBP9.61□□□□□ -0.87
CAPN3-208ENST00000397204 SLC38A7Q9NVC3 462 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 NCDNQ9UBB6 729 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 MAFFQ9ULX9 164 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TNFSF13BQ9Y275 285 aa9.61□□□□□ -0.87
CAPN3-208ENST00000397204 TDRD15B5MCY1 1934 aaKnown RBP9.6□□□□□ -0.87
CAPN3-208ENST00000397204 MED19A0JLT2 244 aaPredicted RBP9.6□□□□□ -0.87
CAPN3-208ENST00000397204 PRR5-ARHGAP8B1AHC4 643 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 H7C4K7 107 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 PRRG1O14668 218 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 SYN3O14994 580 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 LILRB5O75023 590 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 EDN1P05305 212 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 OR52Z1P0C646 297 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 GRM5P41594 1212 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 RPIAP49247 311 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 NRLP54845 237 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 ARHGAP8P85298 464 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 FZD5Q13467 585 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 MRPL58Q14197 206 aaKnown RBP9.6□□□□□ -0.87
CAPN3-208ENST00000397204 ZNF174Q15697 407 aa9.6□□□□□ -0.87
CAPN3-208ENST00000397204 RSPO4Q2I0M5 234 aaPredicted RBP9.6□□□□□ -0.87
CAPN3-208ENST00000397204 GLRA4Q5JXX5 417 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms