RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TET3O43151 1660 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 NRKQ7Z2Y5 1582 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 TMEM120BA0PK00 339 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 KCNA2P16389 499 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 STILQ15468 1287 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 TWF2Q6IBS0 349 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 FAM84BQ96KN1 310 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ERGIC2Q96RQ1 377 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 EGFL8Q99944 293 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 BRD8Q9H0E9 1235 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 SP110Q9HB58 689 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ZC3H7BQ9UGR2 993 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 RWDD3Q9Y3V2 267 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 COL15A1P39059 1388 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 A8MXQ7 604 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ANGPT2O15123 496 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF200P98182 395 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 LBRQ14739 615 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 C3orf20Q8ND61 904 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ANKS1AQ92625 1134 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ARHGEF26Q96DR7 871 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 CMTM5Q96DZ9 223 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ZFYVE19Q96K21 471 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF560Q96MR9 790 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 CCDC134Q9H6E4 229 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 TRIM45Q9H8W5 580 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 COG4Q9H9E3 785 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 MYMKA6NI61 221 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 FAM196BA6NMK8 535 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 KCNN4O15554 427 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 CAND2O75155 1236 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 MYO1DO94832 1006 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 AKR1B1P15121 316 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SESN2P58004 480 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 PIGHQ14442 188 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC9A5Q14940 896 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SBK1Q52WX2 424 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 DAB2IPQ5VWQ8 1189 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 C4orf33Q8N1A6 199 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 OR2W6PQ8NHA6 318 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 PLA2G12BQ9BX93 195 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 TRIM54Q9BYV2 358 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 FHOD1Q9Y613 1164 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 C16orf96A6NNT2 1141 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 F5H423 210 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 UBE3AQ05086 875 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 RNF135Q8IUD6 432 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 PDCD6IPQ8WUM4 868 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 PGBD4Q96DM1 585 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 HIC2Q96JB3 615 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 MKNK1Q9BUB5 465 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SARS2Q9NP81 518 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 WASHC5Q12768 1159 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 TBL3Q12788 808 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 FOXD4Q12950 439 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SF3B3Q15393 1217 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 LRRC8BQ6P9F7 803 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 TRAPPC11Q7Z392 1133 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 TTLL6Q8N841 843 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 CLMNQ96JQ2 1002 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 EPAS1Q99814 870 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 OSBPL8Q9BZF1 889 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 RNPEPQ9H4A4 650 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 TRIM39Q9HCM9 518 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 RGL1Q9NZL6 768 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 AURKCQ9UQB9 309 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SUGT1Q9Y2Z0 365 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 PSMD3O43242 534 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 ATP9BO43861 1147 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 CYP19A1P11511 503 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 KRT33BQ14525 404 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 C16orf89Q6UX73 402 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 ARHGAP22Q7Z5H3 698 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 PRUNE1Q86TP1 453 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 CCDC103Q8IW40 242 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 SLC40A1Q9NP59 571 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 RAB6BQ9NRW1 208 aa10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 HERC5Q9UII4 1024 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-203ENST00000396595 APRTP07741 180 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ADORA2BP29275 332 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 YWHABP31946 246 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 MAGEA4P43358 317 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 NME3Q13232 169 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 TTLL4Q14679 1199 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 NLRP9Q7RTR0 991 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 KCTD17Q8N5Z5 321 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 AGR3Q8TD06 166 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 PPP1R14BQ96C90 147 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 TNIP3Q96KP6 325 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 REEP2Q9BRK0 252 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 MRPL1Q9BYD6 325 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 RUBCNLQ9H714 662 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 MCM8Q9UJA3 840 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 PREX2Q70Z35 1606 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 UBA6A0AVT1 1052 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 HSD17B4P51659 736 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 SEC24CP53992 1094 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 CDK17Q00537 523 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 CENPCQ03188 943 aa10.75□□□□□ -0.69
LIMCH1-203ENST00000396595 ZNF543Q08ER8 600 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms