RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 INHBEP58166 350 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 ACVR2BQ13705 512 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 SPDYE1Q8NFV5 336 aaPredicted RBP19.61■□□□□ 0.73
CCDC3-201ENST00000378825 POMGNT1Q8WZA1 660 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 DENND2DQ9H6A0 471 aaPredicted RBP19.61■□□□□ 0.73
CCDC3-201ENST00000378825 KIAA1586Q9HCI6 787 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 SAYSD1Q9NPB0 183 aa19.61■□□□□ 0.73
CCDC3-201ENST00000378825 EXOC1LA0A1B0GW35 172 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 WDR91A4D1P6 747 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PI4K2BG5E9Z4 385 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 SORBS3O60504 671 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PEX3P56589 373 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 MKRN3Q13064 507 aaKnown RBP19.6■□□□□ 0.73
CCDC3-201ENST00000378825 TRABD2AQ86V40 505 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 ATL2Q8NHH9 583 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 ACER1Q8TDN7 264 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 TXLNGQ9NUQ3 528 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 USTQ9Y2C2 406 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 TCEA3O75764 348 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 KRT10P13645 584 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 TCF4P15884 667 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 CCNG1P51959 295 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PLEKHG4Q58EX7 1191 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 FAM182AQ5T1J6 154 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PCNX4Q63HM2 1172 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 ZNF365Q70YC5 407 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 HAUS6Q7Z4H7 955 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 DENND1AQ8TEH3 1009 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 STK32AQ8WU08 396 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PLCD4Q9BRC7 762 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 CYP39A1Q9NYL5 469 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 ZFATQ9P243 1243 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 BRWD3Q6RI45 1802 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 H0YIN7 160 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 SKIV2L2P42285 1042 aaKnown RBP19.6■□□□□ 0.73
CCDC3-201ENST00000378825 SPP2Q13103 211 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 LMBRD2Q68DH5 695 aaPredicted RBP19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PPP1R21Q6ZMI0 780 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 PASD1Q8IV76 773 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 TRABDQ9H4I3 376 aa19.6■□□□□ 0.73
CCDC3-201ENST00000378825 SSR1P43307 286 aaKnown RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 PSMC4P43686 418 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 YARSP54577 528 aaKnown RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 MFAP3P55082 362 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 SOX10P56693 466 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 OVGP1Q12889 678 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 KLF1Q13351 362 aaPredicted RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 SETDB1Q15047 1291 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 SNRNP35Q16560 246 aaKnown RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 CLEC16AQ2KHT3 1053 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 TAF1BQ53T94 588 aaPredicted RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 KAZNQ674X7 775 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 GMCL1Q96IK5 515 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 RAB3IPQ96QF0 476 aaPredicted RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 PIDD1Q9HB75 910 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 ATRNL1Q5VV63 1379 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 PIK3CDO00329 1044 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 KRT15P19012 456 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 PCK1P35558 622 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 PTDSS1P48651 473 aaKnown RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 CTCFP49711 727 aaPredicted RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 CCDC15Q0P6D6 951 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 GSTA5Q7RTV2 222 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 ACCSQ96QU6 501 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 SYT15Q9BQS2 421 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 LARSQ9P2J5 1176 aaKnown RBP19.59■□□□□ 0.73
CCDC3-201ENST00000378825 DCTN4Q9UJW0 460 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 USP20Q9Y2K6 914 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 ZHX2Q9Y6X8 837 aa19.59■□□□□ 0.73
CCDC3-201ENST00000378825 ITGB5P18084 799 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 ATP4AP20648 1035 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 IRX1P78414 480 aaPredicted RBP19.58■□□□□ 0.73
CCDC3-201ENST00000378825 CDAN1Q8IWY9 1227 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 ANKRD35Q8N283 1001 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 IL31RAQ8NI17 732 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 C10orf82Q8WW14 230 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 ACSF2Q96CM8 615 aaPredicted RBP19.58■□□□□ 0.73
CCDC3-201ENST00000378825 MIPEPQ99797 713 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 ALG13Q9NP73 1137 aaKnown RBP19.58■□□□□ 0.73
CCDC3-201ENST00000378825 NPHS2Q9NP85 383 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 STARD13Q9Y3M8 1113 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 USH1CQ9Y6N9 552 aa19.58■□□□□ 0.73
CCDC3-201ENST00000378825 CA4P22748 312 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 GAD2Q05329 585 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 EFTUD2Q15029 972 aaKnown RBP eCLIP19.58■□□□□ 0.72
CCDC3-201ENST00000378825 B3GNT9Q6UX72 402 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 MCOLN2Q8IZK6 566 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 GMCL1P1Q8NEA9 526 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 HAUS1Q96CS2 278 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 PRR11Q96HE9 360 aaPredicted RBP19.58■□□□□ 0.72
CCDC3-201ENST00000378825 WDR11Q9BZH6 1224 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 SCAF8Q9UPN6 1271 aaKnown RBP19.58■□□□□ 0.72
CCDC3-201ENST00000378825 LRRC42Q9Y546 428 aa19.58■□□□□ 0.72
CCDC3-201ENST00000378825 YDJCA8MPS7 323 aa19.57■□□□□ 0.72
CCDC3-201ENST00000378825 GOLGA8SH3BPF8 625 aa19.57■□□□□ 0.72
CCDC3-201ENST00000378825 GOLGA8MH3BSY2 632 aa19.57■□□□□ 0.72
CCDC3-201ENST00000378825 EDF1O60869 148 aaKnown RBP19.57■□□□□ 0.72
CCDC3-201ENST00000378825 POLR2MP0CAP2 368 aa19.57■□□□□ 0.72
CCDC3-201ENST00000378825 STAT4Q14765 748 aa19.57■□□□□ 0.72
CCDC3-201ENST00000378825 GNPTABQ3T906 1256 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms